KEGG   Acidovorax carolinensis P3: CBP35_09710
Entry
CBP35_09710       CDS       T04998                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
acis  Acidovorax carolinensis P3
Pathway
acis03030  DNA replication
acis03410  Base excision repair
acis03420  Nucleotide excision repair
acis03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CBP35_09710 (ligA)
   03410 Base excision repair
    CBP35_09710 (ligA)
   03420 Nucleotide excision repair
    CBP35_09710 (ligA)
   03430 Mismatch repair
    CBP35_09710 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acis03032]
    CBP35_09710 (ligA)
   03400 DNA repair and recombination proteins [BR:acis03400]
    CBP35_09710 (ligA)
Enzymes [BR:acis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CBP35_09710 (ligA)
DNA replication proteins [BR:acis03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CBP35_09710 (ligA)
DNA repair and recombination proteins [BR:acis03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CBP35_09710 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CBP35_09710 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CBP35_09710 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CBP35_09710 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 TF_Zn_Ribbon
Other DBs
NCBI-ProteinID: ART55215
UniProt: A0A240UD43
Position
complement(2117538..2119649)
AA seq 703 aa
MTENFDLFSASAPADIAQPAIKIKALRDQLNHWAHQYYVLDAPTVPDADYDRAFRELQAL
EAAHPELITPDSPTQRVIGAVMDGLAPVRHAVPMLSIHTETDTEATGAQAFDARMRRELG
LSETDPAIEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNVRTIRQIPLTLP
ECVPPLLEVRGEVYMRRAEFDALNERQREQGGKTFVNPRNAAAGAVRQLDSGITAQRPLS
FFAYGLGAITPPAEGGPVFRTHYEMLQTLKSWGFPVAAQVQIAVGATELVAFHQQVGASR
DVLPYDIDGVVYKVNSLQLQRDLGFKTREPRWAVAHKYPAQEMATRIEGIDVQVGRTGKI
TPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDTVIVRRAGDVIPEVVGVVPGNRAG
YVPNFKMPRTCPVCGSDVVREKGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDK
LVDQLVDANVIRTLPDLYRLGLTSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFGLGL
RHVGEATAKDLARHFGTLDAIMDASVEQLLQVPDVGPVVAQSLHTFFQQPHNREVVEQLR
ACGVTWPEGTPAERAPQVLAGKTVVLTGTLPTLSRDAAKDMLEAAGAKVAGSVSKKTSYV
VAGEEAGSKLAKAQELGVPVLDEAGMLALLQHAGGTAAKEGAD
NT seq 2112 nt   +upstreamnt  +downstreamnt
atgaccgagaatttcgacctgttttcggcctccgcgcccgcagatattgcgcaaccagct
atcaaaataaaagcgttgcgcgaccagctcaaccactgggcgcaccagtactacgtgctg
gacgcgcccacggtgcccgacgccgactacgaccgcgcgttccgcgaactgcaggccctg
gaggccgcgcaccccgagctcatcacccccgattcgcccacgcagcgcgtgattggcgcg
gtgatggacggcctggcgcccgtgcgccacgcggtgcccatgctcagcatccacaccgag
accgacacggaggccacgggtgcgcaggcgttcgatgcccgcatgcggcgcgagctgggc
ctttcggaaacagaccccgccatcgaatacgtggccgaacccaagttcgacggcctcgcc
atgagcctgcgctacgaaaacggccgcctggtgcaggccgccacgcgcggcgacggcgaa
gtgggcgaggacgtgacgcacaacgttcgcaccatccggcagatccctttgaccctacca
gagtgcgttccgccgctgctggaagtgcgcggtgaggtctacatgcgccgtgccgaattc
gacgcgctcaacgagcgccagcgcgagcagggcggcaagacctttgtgaacccacgcaac
gccgctgcgggtgcggtgcgccagctcgattccggcatcaccgcccagcgccctctgagc
ttttttgcctatggcctgggtgccatcacaccacctgctgaaggcgggccggtgttccgc
acgcactacgagatgctgcagaccctcaaatcatggggttttccggtcgcagcgcaggtg
cagattgcggtaggcgctacggagttggtagcgtttcaccagcaggtgggcgccagccgc
gatgtgctgccgtacgacatcgacggcgtggtctacaaggtcaactccctgcagctgcag
cgcgacctgggcttcaagacccgcgaaccgcgctgggccgtggcgcacaaatacccggca
caggaaatggccacgcgcatcgagggcatcgatgtgcaggtgggccgcaccggcaagatc
acgccggtggcacgcctggcgcccgtgtttgtggggggcgtcacggtcaccaacgccacg
ctgcacaacctgttcgagatccgcaagaagggtgtgcgcgtgggcgacaccgtcatcgtg
cgccgcgctggcgatgtgattcccgaggtcgtcggcgtggtgccgggcaaccgcgccggc
tatgtgcccaacttcaaaatgcccagaacctgccccgtatgcggcagcgacgtggtgcgc
gaaaagggcgaggccaaccaccgctgcacgggcggcctgttctgcgccgcgcagcgcaag
gaagccatcctgcactttgccgcgcgccgcgccatggacatcgagggcctgggcgacaag
ctggtggaccagctggtggatgcgaacgtgatccgcacgctgcccgacctgtaccggctg
gggctcacatccctgattgcgctggagcgcatggccgaaaaatcggcccagaacgtgctg
gctgcgctcgaaaaatccaagcaaaccacgctgccgcgctttctgttcggcctggggctg
cgccatgtgggcgaggccacggccaaagacctggcgcgccactttggcacgctggacgcc
atcatggatgccagcgtcgagcagttgctgcaggtgcccgacgtggggccggtggtggcg
cagagcctgcacaccttcttccagcagccgcacaaccgcgaggtggtcgagcagctgcgt
gcctgcggcgtgacctggcccgaaggcaccccggccgagcgcgcgccccaggtgctggcg
ggcaagacggtggttctgaccggcaccttgcctaccctgagccgcgacgccgccaaagac
atgctcgaagccgctggcgccaaggtggcgggctccgtcagcaaaaagaccagctatgtg
gtggcaggcgaggaagccggcagcaagctggccaaggcccaggagctgggtgtgccggtg
ctggacgaagccggcatgctggcgctgttgcagcacgctggcggcacggccgcaaaagaa
ggcgccgactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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