KEGG   Acholeplasma laidlawii: ACL_0172
Entry
ACL_0172          CDS       T00659                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
acl  Acholeplasma laidlawii
Pathway
acl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:acl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ACL_0172 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acl03021]
    ACL_0172 (rpoC)
   03400 DNA repair and recombination proteins [BR:acl03400]
    ACL_0172 (rpoC)
Enzymes [BR:acl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ACL_0172 (rpoC)
Transcription machinery [BR:acl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ACL_0172 (rpoC)
DNA repair and recombination proteins [BR:acl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ACL_0172 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ABX80798
UniProt: A9NEL8
Position
158358..162485
AA seq 1375 aa
MAKNEVLSLPVDSLKLSQTALDRLKLSGISRLEDFNTFNLKELQMLLSDSFNEVLPTLIY
YKLPRDVRDLSLSDEVVSVLETAGIKDLEALTKYDKSTLYHVFKDDEFLLKEINDLFELY
HEEKLSTLNVATEVFEEVALPQEVSVEDRVNKIIQPIRKTYGSKAFTHFKVRLASPDEIR
NWSYGEVINHETINYRTSKPEPGGLFDERIFGPTRDYQCACGKKQTVNKGQICPKCGIEI
TESKVRRERMGHINLEAPVVHTWYLKNSPSRLAILLGIKAKQLEEVVYHASYIVTDPGQN
TPLAKKQILSEQDYSLLVEEYGSRFTALTGAEAVKKLLQDLDLDKEVKNLRKRLKTSSKQ
KRDRIIKRLDVVEAFNQSDNKPEWMVMDVIPVIPPDLRPMVPLDGGRFATTDLNDLYRRI
LNRNNRLKKQKEQMAPRLITKNEKRMLQEAVDALFDNAKRGKKAAVERNRHLKSLSDLLR
GKQGRFRQNLLGKRVDYSGRSVIIVGPDLEMYQCGIPREMAITLFKPFILRELQLTHGAE
KKNANAKYERRDDDTWRALEKVVREHPVLLNRAPTLHRLGIQAFEVKLIDGKAIRLHPLV
TPAFNADFDGDQMAVHLPLSPEAQAEARLLMLASNNILNPRDGKPVVTPSQDMVLGNYYL
TIEESKDRNFGDDLERTKKHQEKHRHEGKFFSSIDEVKIAYENKDISLHTRIIIKPESVK
DTFTVEQKNMYLVTTLGKIIFNEILPETFPYVNEPTMSNLSEKTPDIYFIKKGVNPKDAL
KHIPTPEPFKKRFLSMVIAQVFKLFHISETSRMLDKLKDLGFKYSTVAGITISYADINVY
SKKKEMVEATEEEINEIEEWFEDGLLTDSERRKLVIDKWTNVKNEIQSGIMKEFDKDNNI
FMMSDSGARGNVSNFTQLVGMRGLMSNPKGETIEVPVQSSFREGLTVSEFFISTHGARKG
STDTALKTAESGYLTRRLVDVSQDVIIVEDDCGSSHGVYVEAIKDESGKEIVPLYDRIYG
RFAAHDIISPKTGEVFVKRNELITEEIGLAIVKSGMQKVEIRSIMTCTSSHGICAKDYGI
NLATNQFVEVGEAIGVVAAQSIGEPGTQLTMRTFHTGGVAAGADITQGLPRIQELFEARN
PKGKATISEVEGKVKDISRRGGSISITITDTQGTEYKYTLDPNIEALVKKGQDVVAGQKL
SSGSINPKELLRVTDVKTASNYILEEVQKVYRAQGVEISDKHVEVIIRQMLRRIMVIIEG
DTNILPGTEVSIDEFKRENKEVLKNRGRLAVGRPILLGITRASLRSDSFLSAASFQETTR
ILTDAAIRSKKDELHGLKENVIIGGLIPAGTGILQEKFFHYDQPEDKKPIYDDFE
NT seq 4128 nt   +upstreamnt  +downstreamnt
atggctaagaacgaagtattatccttacctgtagattctttaaaattaagtcaaactgca
ttagatagattaaaactatctggtattagtcgtttagaagatttcaatacatttaactta
aaagaacttcaaatgttattgagtgattcttttaatgaagtccttccaacattaatttat
tacaaattaccaagagatgtaagagatttatcattatcagatgaagttgtttcagtactt
gaaacagcaggtattaaagatttagaagcattaacaaaatatgacaaatctacactttat
catgtgtttaaagacgatgagttcttattaaaagaaatcaacgatttatttgaactatat
cacgaagaaaaattatctactcttaatgtagcaacagaagtttttgaagaagtagcactt
cctcaagaggtatctgttgaagacagagtaaataagatcattcaaccaattcgtaaaaca
tatggttctaaagcatttacgcactttaaagtgagacttgcaagtccagatgaaattaga
aactggtcttatggtgaagttattaaccatgaaactattaactatagaacatcaaaacct
gaaccaggtggactatttgatgaaagaatttttggacctacaagagattaccaatgtgct
tgtggtaagaaacaaactgtaaacaaaggccaaatttgtccaaaatgtggtattgaaatt
acagagtctaaagtacgtcgtgaacgtatgggacatattaacttagaagcacctgttgtg
catacatggtacttaaagaactctccttcaagattagctatcctattaggcattaaagct
aaacaattagaagaagttgtttaccatgcaagttatattgtgactgacccaggtcaaaac
acaccactagctaaaaaacaaatcttatccgaacaagactattctttacttgttgaagaa
tatggttcaagatttacagcgcttactggtgctgaagcggttaaaaaattacttcaagat
ctagatttagataaagaagttaaaaatttaagaaaacgtcttaaaacaagttctaaacaa
aaacgtgatcgtattattaaacgtttagatgttgttgaagcatttaaccaatcagacaat
aaacctgagtggatggttatggatgttattccagtcattccaccagatttacgtccaatg
gttccactagatggtggtagatttgctacaactgaccttaacgacttatatagaagaatc
ttaaacagaaacaaccgtttaaagaaacaaaaagaacaaatggcgcctcgtttaattact
aagaacgaaaagcgtatgttacaagaagcagtagatgcattattcgataacgcgaaacgc
ggtaagaaggctgctgttgaacgtaaccgccacttaaaatcattatctgatttactacgt
ggtaaacaaggtcgtttccgtcaaaacttattaggaaaacgtgtggactactctggacgt
tcagttattattgttggtccagacttagagatgtaccaatgtggtattcctcgtgaaatg
gcaattacattatttaaaccatttatcttacgtgaattacaactaacacatggtgcagaa
aagaaaaatgcaaacgctaaatacgaaagacgcgatgacgacacatggcgtgcacttgaa
aaagttgtacgtgagcacccagtattactaaaccgtgcgccaacgctacatagacttggt
attcaagcattcgaagtgaaattaattgatggtaaagcgattcgtctacacccacttgtt
acacctgcgtttaacgcggactttgacggggaccaaatggcggttcacttaccactatca
ccagaagctcaagcagaagcaagattattaatgcttgcatctaacaacatcttaaaccct
agagatggtaaaccagttgttacaccatctcaagatatggttttaggtaactattaccta
actattgaagaatctaaagatcgtaattttggtgatgatcttgaaagaactaagaaacac
caagaaaagcatcgccatgaaggtaagttcttctcatctattgatgaagttaagattgct
tatgagaataaagatatttctttacatacaagaattatcattaaaccagaatcagttaaa
gacacatttacagtagaacaaaagaacatgtatttagtgacaacattaggtaaaatcatc
tttaacgaaatcttacctgaaacattcccttatgtaaatgaacctacaatgtctaactta
agtgaaaagacaccagacatttactttattaaaaagggtgtgaatccaaaggatgcacta
aagcatattcctacacctgagccatttaagaagagattcttatctatggttattgctcaa
gtatttaaattattccacatttctgaaacatcaagaatgttagataaattaaaagactta
ggatttaaatattcaacagttgctggtattacaatttcttatgcagacatcaacgtatac
tccaagaaaaaagaaatggttgaagcaaccgaagaagaaattaatgaaattgaagaatgg
ttcgaagatggattactaacagattcagaacgtcgtaaacttgttattgataaatggaca
aatgttaaaaacgaaattcaatctggtattatgaaagaattcgataaagataacaacatc
tttatgatgagtgactctggtgcccgcggtaacgtatctaactttacacagttagtcggt
atgagaggacttatgagtaaccctaaaggggaaacgattgaagttccagttcaatcatca
tttagagaaggtctaaccgtatctgaattctttatctccacccacggtgcgagaaaaggt
tctaccgataccgcgcttaagaccgcagaatctggttacttaacacgtcgtttagtcgac
gtatcacaagacgttattattgttgaggatgattgtggttcaagccatggtgtttatgta
gaagcaattaaagatgagtcaggtaaagaaatcgttccattatacgatagaatttatggc
cgctttgctgcacatgacattatcagtccaaaaactggtgaagtatttgtgaaacgtaat
gaactgattactgaagaaatcggtttggcaatcgttaaatcaggtatgcaaaaagttgaa
attagaagtattatgacatgtacatcaagtcatggtatttgtgcgaaagactacggtatt
aacttagctacaaaccaatttgttgaagttggtgaagctattggggttgttgctgctcaa
tctattggtgagccaggtacacagttaaccatgcgtacattccatacaggtggggttgct
gctggtgccgatattactcaaggtttaccacgtattcaagagttatttgaagcacgtaat
ccaaaaggtaaagcaacgatttcagaagttgaaggtaaagttaaagatatctcacgtcgt
ggtggttcaattagcattacaattactgatacccaaggcactgaatacaaatacacgctt
gatccaaacattgaagctttagttaaaaaaggtcaagatgttgttgcaggtcaaaaacta
tctagtggatctattaatccaaaagaattactacgtgtaacagatgttaaaacagcatct
aactacattttagaagaagttcaaaaagtttaccgcgctcaaggggttgaaatttctgac
aagcacgttgaagttattattcgtcaaatgttacgtcgtatcatggtaattattgaaggt
gataccaacatcttaccaggtacagaggtatctattgatgagtttaaacgtgaaaataaa
gaagtacttaaaaaccgtggtcgcttagctgttggtcgcccaatactattaggtattact
agagcatctctaagaagtgattccttcttatctgctgcatccttccaagaaactacaaga
atcttaacagatgctgcaattagaagtaagaaagatgaattacacggactaaaagaaaac
gtcattatcggtggattaatcccagctggtacaggtatactgcaagaaaaattcttccat
tatgatcaaccagaagataaaaaaccaatatatgatgattttgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (56)   

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