KEGG   Arthrobacter crystallopoietes: AC20117_16140
Entry
AC20117_16140     CDS       T05322                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
acry  Arthrobacter crystallopoietes
Pathway
acry03030  DNA replication
acry03410  Base excision repair
acry03420  Nucleotide excision repair
acry03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acry00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AC20117_16140
   03410 Base excision repair
    AC20117_16140
   03420 Nucleotide excision repair
    AC20117_16140
   03430 Mismatch repair
    AC20117_16140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acry03032]
    AC20117_16140
   03400 DNA repair and recombination proteins [BR:acry03400]
    AC20117_16140
Enzymes [BR:acry01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AC20117_16140
DNA replication proteins [BR:acry03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AC20117_16140
DNA repair and recombination proteins [BR:acry03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AC20117_16140
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AC20117_16140
   MMR (mismatch excision repair)
    DNA ligase
     AC20117_16140
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AC20117_16140
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH PTCB-BRCT BRCT_2 Auto_anti-p27
Other DBs
NCBI-ProteinID: AUI52087
UniProt: A0A1H0ZAE1
Position
3472308..3474599
AA seq 763 aa
MGHALGQDSSVSKVEVQANEIPSDALRDEYEQLTEDVRRYRYAYYNEDAPLVSDAEFDRL
YRRLEEIEALHPEMVANDSPTQEVGGEVSAAFTPVQHLQRMYSLEDVFSLDELQVWIDRA
SSSVEKLGRAQDLKWLTEVKIDGLAVNLLYREGELVRAATRGDGHTGEDITHNALTLKDI
PRRLKGKNLPAEVEIRGEVFIPSKAFLELNEKMVEAGKAPFANPRNAAAGSLRQKDPALT
AQRPLSMFVHGIGAREGLSAGSQSETYTLLQEWGLPTSPYFKVLDSYQEVLEFIQHFGDH
RHDLLHEIDGIVVKVDNFGLQRGLGHTSRVPRWAVAYKYPPEEVHTKLLDIQVNVGRTGR
VTPYGVMEPVKVAGSTVEMATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEIVGPVVALRD
GSEREFVMPTECPSCGTPLAPAKEGDVDIRCPNARSCPSQLRERVFHLAGRGAFDIEALG
WEAAIALTQPAEPEQPPLTTEANVFDLTPEMLADVKIAREKKSKGVATGEIELVPYFYTK
GTPKKPSEPSANTRKLFTELEKAKGQPLWRVLVALSIRHVGPTASRALATAFGSMDAIRA
ASEEQLADVDGVGPIIARALIEWFEVDWHREIVDTWAKAGVRMADEVDESKPRTLEGLTI
VVTGSLENFSRDEAKEAIISRGGKASGSVSKKTDYVVAGESAGSKLDKAEQLGLHVLDEG
GFVKLLENGPDTVVAGPAETSPAGTGAGDADAAESGPEGAGES
NT seq 2292 nt   +upstreamnt  +downstreamnt
atgggccatgctttagggcaagatagttccgtgagcaaagtggaagtgcaggccaatgaa
atccccagtgacgccctccgggacgagtacgagcagctgacggaggacgtccggcgctac
cgctacgcgtactacaacgaggacgccccgctggtctccgacgccgagttcgaccggctc
taccggcggctggaggaaatcgaagcgctgcacccggagatggtggccaacgattcgccc
acccaggaagtcggcggcgaagtgtccgcagccttcactccggtgcagcacctgcagcgg
atgtactcgctggaggacgtgttctccctcgatgagcttcaggtgtggattgaccgggcg
tcgtcgtcggtcgaaaagctgggccgcgcgcaggacctgaagtggttgaccgaggtcaag
atcgacggccttgccgtgaacctgctctaccgcgagggcgaactggtccgggccgccacc
cgcggcgacggccacaccggggaggacatcacccacaacgcgctgaccctcaaggacatc
ccgcgccgcctcaagggcaagaacctgccggccgaagtggagatccggggcgaggtcttt
atcccctccaaggcgttcctggagctgaacgagaagatggtggaggccggcaaggcgccc
ttcgccaacccgcgcaacgccgccgcgggatccttgcggcagaaggacccggccctgacc
gcgcagcggccgctgagcatgtttgtccacggcatcggcgcgcgcgagggcctgtccgcg
ggcagccagtcggagacctacacgctgctgcaggaatggggcctgcccaccagcccctac
ttcaaggtgctggacagctaccaggaggtgctggaattcatccagcatttcggcgaccac
cggcatgacctgctgcacgagatcgacggcattgtcgtcaaggtcgacaatttcgggctg
cagcggggcctgggccacacgtcgcgggtgccgcgctgggccgtggcctacaagtatccg
ccggaggaagtgcacaccaagctgctggacatccaggtcaacgtgggccgcaccggccgg
gtcacgccgtacggggtgatggaaccggtgaaggtggcaggttccaccgtcgagatggca
accctgcacaaccaggacgtggtgaaggcgaagggcgtgctgatcggcgacaccgtggtg
ctgcgcaaggccggggacgtgattccggaaatcgtgggaccggtggtggcgctgcgggac
ggctccgaacgcgaattcgtgatgcccaccgaatgcccgtcctgcggcacgccgctggcg
ccggccaaggaaggcgacgtggacatccgctgccccaacgcgcggtcatgtccctcccag
ttgcgtgaacgcgtgttccatctggccgggcgcggcgcgttcgatatcgaggcgctcggc
tgggaagcggcgatcgccctcacccagccggccgaaccggagcagccgccgctgaccacc
gaggccaacgtcttcgacctcaccccggagatgctggcggacgtgaagatcgcccgcgag
aagaagtccaagggcgtggccaccggcgagatcgaactagtgccctacttctacacgaag
gggacgcccaagaagccctcagagccgagcgccaatacgcgcaagcttttcaccgagttg
gagaaggccaaaggccagccgctgtggcgggtcctcgtggccttgtccatccggcacgtg
ggacccaccgcctcccgcgcgctggcgacggcattcgggtccatggacgccatccgggcg
gcatcggaagagcagctcgcggacgtcgacggcgtcggaccgatcatcgcccgcgccctc
atcgagtggttcgaggtggactggcaccgcgagatcgtagacacctgggcaaaggccggc
gtgcggatggccgacgaggtggacgagagcaaaccccgcacgctggaggggctgaccatc
gtggtgaccggctcgctggaaaacttcagccgggacgaggccaaggaagctatcatcagc
cgcggcggcaaggcctccggctccgtgtcgaagaagacggactacgtggtcgcgggggaa
agcgccgggtccaaactggacaaggccgagcagctgggcctgcacgtgctcgacgaggga
ggcttcgtcaagctgctggaaaacggtccggatacagtcgtggccggtccggcagaaacc
agcccggcaggaaccggcgcaggggatgccgacgcggccgagtccggtccggaaggtgcc
ggcgaaagctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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