KEGG   Anolis carolinensis (green anole): 100564102
Entry
100564102         CDS       T01608                                 
Symbol
patl1
Name
(RefSeq) PAT1 homolog 1, processing body mRNA decay factor
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
acs  Anolis carolinensis (green anole)
Pathway
acs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100564102 (patl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acs03019]
    100564102 (patl1)
Messenger RNA biogenesis [BR:acs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100564102 (patl1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     100564102 (patl1)
SSDB
Motif
Pfam: PAT1 CHASE3
Other DBs
NCBI-GeneID: 100564102
NCBI-ProteinID: XP_008108913
Ensembl: ENSACAG00000006607
UniProt: G1KFK1
Position
1:90967637..90995910
AA seq 765 aa
MFRYQSLEDCPLDEDDEAYHNLAEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAEMEEKP
ASAGEQVERGVTDEMDLLGDHEENLAERLSKMVIDNELEDPAIMQAVQTRPLVQHSTGLN
SSIWDGPSVLRRIRGPLLNQEVPSVSVLEYALPQRPPQAQEEEQDVSERALPRRSSSPVI
GSPPVRAVPIGTPPKQPSMPNFNQQILCPKPVHIRVPIQQRYPSPFSERMSPNQLCNVTN
SSLLGHPFPPSVTPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVSSPLASMNPKLLQGR
VGQMIPPASGFRAFFGAPPAPSQHHSPCPGAHLQNLRPQPQMFRPDTTHLHPQHRRLLHQ
RQQQNRSQHRNLNGSVGDRGNHRNNHQEQIRKDPYANLMLQREKDWVSKIQMMQLQSTDP
YLDDFYYQNYFQKLEKLSAAEDMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLT
VSSVNNPRKMIDAVVTLRGEEDETKEKQVRDKRRQTLVMIEKTYSLLLDVEDYERRYLLS
LEGDRLALMEERKQKICDMYDNLRGKTSNQESKLSDDPFVQIMCIRKGKRLVGRILPFLS
TEQAANVLMATARNLPFLIKKDAQDEVLPCLLRPFSLVLYHLPLGTVACILQQLMNLPQS
TTAAPSANQHLTAVLQNKFGLSLLYLVLSRGEELQNSDSNTEHMQDNQWADLMFMATREL
LRIPQAALAKPVTPPSNLLSLFSRYVDRQKLNVLETKLQLIQGIR
NT seq 2298 nt   +upstreamnt  +downstreamnt
atgttccgctatcagtctctggaggactgccctttagatgaggatgatgaagcctatcat
aacttggctgaggaagatgaagatattgaccagttcaatgatgacacctttggagctggt
gcagttgatgatgattggcaggaagcccatgaaaggctggcagagatggaggaaaagcct
gcatctgcaggagaacaagtggaacggggagtcactgacgagatggacctactgggggac
catgaagagaacctggcagagaggttgagtaaaatggtgattgataatgagctagaagac
ccagccatcatgcaggctgtgcaaacccgacctctggtacagcactcaactggccttaat
tcaagcatctgggatggtccttcagtactcaggcgaattagagggccacttctcaatcag
gaggttccctctgtgtcagtactagaatatgccctcccacagaggcctccccaagcccag
gaagaggagcaggatgtttcggagcgggcgttgccaaggcggtcatcctcaccagtcatt
ggcagtcctcctgtgagggctgttcccattgggaccccaccaaagcagcccagcatgccc
aactttaaccagcagatcttatgtccaaagcctgttcacatcagagtcccaattcagcaa
cgttatccaagtccctttagtgaaaggatgtctccaaaccagctctgcaatgtgacgaat
tcctccctcctgggacacccatttcctcccagtgttactcctgttctcacccacctccaa
agagcacagctgctaggaggagcacaggctggtaggatgtctcccagtcagtttgcacgg
gtgtctggccttgttagcagccctcttgcatctatgaaccctaaactcctccaaggcaga
gttgggcagatgatacccccagccagcggattccgtgccttctttggggcaccacctgca
ccatcacaacatcactccccgtgtcctggagctcatttgcagaacctaaggcctcagcca
cagatgttcaggccagatacaactcaccttcacccacagcaccgacgactcttacatcag
aggcagcagcaaaacaggagtcagcaccggaatctaaatggatcggttggggaccgaggg
aatcatcgaaataaccaccaggaacaaatcagaaaggatccatatgccaatctcatgctc
cagcgggaaaaggactgggtatcaaagatccagatgatgcaactgcagagcactgatccc
tacttggatgacttctattatcagaactattttcagaagctggaaaaattatctgcggct
gaggatatgcatggtgatggtcctaagaaagaacgcactaagctgatcaccccacaagtt
gcaaagttagagcatgcctataagccagtgcagtttgaaggctcactagggaagctgaca
gtctccagtgtgaacaatccccggaaaatgattgatgctgttgtgacgctgcgaggtgaa
gaagacgagacaaaagagaaacaggttcgagataaaaggcgtcagactcttgtcatgatt
gagaagacatacagcctactcctggatgtagaagactatgagaggcgctacctcttgagc
ctggaaggggataggctagccttgatggaggagaggaagcaaaagatctgtgatatgtat
gacaatctaagagggaaaacatccaaccaggaaagcaagctgagcgatgacccttttgtg
cagattatgtgcatccggaaaggaaagcgtctggttggccggattctgcccttcttgtcc
actgaacaagctgccaacgttctcatggcaacagccaggaacctgcccttcctaatcaag
aaggatgcccaggatgaggttctcccttgtttgctgaggcccttctcccttgttctctac
catctacccctgggaactgtggcctgcatcctgcagcagctcatgaacctacctcagagc
acaacagcagctccatctgccaaccaacacctcacagctgtgctccagaacaagtttggc
ctctctcttctgtatttggtcttgagccgaggagaagaactgcaaaattcagactctaat
acagagcacatgcaagacaaccagtgggcggatctgatgttcatggcaacccgggagctt
ctccggatcccgcaggcagccttggcaaagccagtgactcccccttctaatctcttatca
ctcttctctcgctatgttgatcggcagaagctgaatgtgctagaaacaaagttgcagttg
attcaaggaatacggtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (37)   

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