KEGG   Alicycliphilus denitrificans K601: Alide2_1416
Entry
Alide2_1416       CDS       T01463                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
adk  Alicycliphilus denitrificans K601
Pathway
adk02024  Quorum sensing
adk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:adk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Alide2_1416
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Alide2_1416
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:adk03019]
    Alide2_1416
   03036 Chromosome and associated proteins [BR:adk03036]
    Alide2_1416
Messenger RNA biogenesis [BR:adk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Alide2_1416
Chromosome and associated proteins [BR:adk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Alide2_1416
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AEB83816
UniProt: F4GEL4
Position
1492674..1492976
AA seq 100 aa
MTVVRCRFTTTFLNTENIVSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQ
YVVLLRNTVTQMVYKHAISTIVPGRAVNFSTAEAAEGDNQ
NT seq 303 nt   +upstreamnt  +downstreamnt
atgactgtggtaaggtgccggtttacaacaacattcttgaacacggagaatatcgtgagc
aataaaggccagcttcttcaagatcccttcctgaacgcgctgcgtcgcgagcatgtgccg
gtgtccatctatctggtgaacggcatcaagctgcaggggcagatcgaatccttcgatcaa
tacgtggtgctgctgcgcaacacggtgacgcagatggtctacaagcacgccatctccacg
atcgttccgggccgcgccgtcaacttctcgacggcggaagccgccgaaggggacaaccag
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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