KEGG   Auricularia subglabra: AURDEDRAFT_170030
Entry
AURDEDRAFT_170030 CDS       T03129                                 
Name
(GenBank) hypothetical protein
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
adl  Auricularia subglabra
Pathway
adl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:adl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AURDEDRAFT_170030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:adl03400]
    AURDEDRAFT_170030
Enzymes [BR:adl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AURDEDRAFT_170030
DNA repair and recombination proteins [BR:adl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     AURDEDRAFT_170030
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N RNA_ligase
Other DBs
NCBI-ProteinID: EJD40837
JGI: 170030
UniProt: J0WWQ2
AA seq 978 aa
MDVPFTHFADLVESLSRIPPVRTAQSGGTRPSDKAHTLLRRWILSVQDHKDAASGLAPGT
ALAFFRLLFPDDDRRRYGMQETALAEALVDVLGISAAGRGKRLVHWGEWSRTDPKVGCLG
QELRQAYELSYSKREGEVPSMREVDAMLTELAALSPFSQVAQTTTETPRRTRKAILRSLY
KRLSPFEAAVVTQLILRDLRPIIYPGTSTLHGTAALMDYNSRAYHILTKWEAMKVWHEDL
PRAYRARGSWEEACDAWDKNQLSSACKPRIGVPVEIPKTVKGTSCENVAKIYSRCSAIYA
ETKYDGERMQIHIDFSLPSHQQIRIFSKSKRDSTADRDATLSLIRDALHGSGTRKAILEA
EMVAYSDELGHIDEFWRIRSLIESTAHGVRRRPHPRPTELEGVTQDSMVSNASASGTRHL
ALVFFDVLLHNDECLLDTAYESRRACLERIIRCSKGFVMLVERVKIDMKDGKAVESIEHV
FARRCAEFEEGLVFKAVGGGYNDPHSPWVKLKKDYIAGLGDAVDLVIVGATWDKDRGREL
GVGPRTFTTFWVAAPHGYEGAQPRVDVLFTASYGLSRAALEELNFIITAQDCIPWRKENP
DQTLASLPYVCEFGLMVARPQVLLRVPFLAEVMGAGFTKARGGNNYELRFPRILKVHRPF
DRRWTEGVNIEEYQGLARCAVGRERKGKHVDDDVHAMWNIQSSPRVRSELKRKQREDSLL
DKMDSLNGRKRRKTDGGEMVKPPDTSSSTSGAPPLTETWPLVPFTPAAVVSDALPKMDLK
LEPPATPPATPPAPMSLSRVPLRESNHESTHAAHSKSRNSTSSFATSKPSAFPPPVATTT
KMLGAGLHDYTQIKEYLAASFVCILQPRGSAVAKACLTSRPRSQQLIPEGRLFHSVQALL
FAIGWQGGENGLRHSDRGIVFADSKDEVLLRDLVAVLAQLWTPQKKACWVVDVSVLNWES
LPNFTLEIEQRILWRPPS
NT seq 2937 nt   +upstreamnt  +downstreamnt
atggacgtgccgtttacccattttgccgatttggttgagagcctgtctcggattccaccc
gttcggacagcgcagagcggcgggacgcgtccttcagacaaggcgcacactctattgaga
cgatggatactgtcagtgcaggatcacaaggatgctgcatctggcctggcacctggcacc
gcgctggcgttctttcgtctgctattccccgacgacgaccgccggcgctatgggatgcag
gaaactgccctggccgaagcgctggttgacgtcctgggcatatctgctgcagggcgtggc
aagcgcctggtacactggggcgaatggtcgcgcaccgatcccaaggttgggtgtctcgga
caggagctacggcaggcttacgagctctcatactcgaaacgcgaaggagaagttcccagc
atgcgcgaggtggacgccatgctcacagagctcgctgctttatcgccattctcgcaagtc
gcacagacgaccacggaaaccccgcgcaggactcgaaaggcgatccttcgctccctctac
aagaggttgtcgccattcgaagctgcggtcgtcacgcagctcatcctacgcgacctcagg
cccattatctatccagggacctcgaccctccatggcacggctgccctcatggactataac
tctcgcgcttatcacatcctaaccaaatgggaagccatgaaggtctggcatgaagatctc
cctcgcgcgtatcgtgctcgagggtcatgggaggaggcatgcgacgcttgggacaagaat
caactttcttccgcctgcaaaccccgcattggggttcccgtcgaaattcccaaaacggtc
aaggggacgtcgtgtgagaacgtggccaagatttactcgcgctgtagcgcaatctacgcc
gaaacaaaatacgatggcgagcgcatgcagatccatatagacttctctctgccctcgcac
cagcaaattcgcatattcagcaagtcgaagcgtgattcgactgcagaccgcgacgcgacg
ctctctctcatccgcgacgcgctccacggcagcggcacccgaaaagcgatcctagaagca
gagatggttgcgtactcggacgagctcggacacatcgatgaattctggcgcatacgcagc
ctcatcgagtcgaccgcccacggcgtgcgaaggcgccctcacccgcgcccgacggagctg
gaaggcgtgacgcaggactccatggtctccaacgcgtccgccagcgggactcggcatctt
gccctcgtgttctttgacgtgctcttgcacaacgacgagtgtttgctggacactgcatat
gagagccggcgcgcgtgcctcgagcgtatcatccggtgctcgaagggcttcgttatgctc
gttgagcgggtgaaaatcgacatgaaggatgggaaggctgtcgaaagcatcgaacatgtc
ttcgcacgtcgctgtgccgagttcgaggagggtttggttttcaaggctgttggcggcgga
tacaatgacccgcattcgccctgggtcaaactgaagaaagactatattgcgggcctcggc
gatgccgtcgaccttgtgatcgttggagcaacgtgggacaaggaccgtggacgcgagcta
ggcgtcggccccaggacgttcaccaccttctgggtggcagctcctcacggttacgaaggc
gcacaaccccgagtcgatgtgctcttcaccgcatcgtacggtttgagcagagccgccctc
gaagaactgaacttcatcatcaccgctcaggactgtattccgtggaggaaggagaacccc
gaccaaaccctggcgtcgttgccatatgtctgcgagttcggtttaatggtcgcgcggcca
caagtgctgttgcgcgtaccatttctcgctgaggtcatgggcgctggcttcactaaggct
cgcggaggaaacaattacgagctacgattcccgaggatcctaaaggtacatcgacccttc
gacaggcgctggaccgaaggcgtgaacatcgaagagtaccaaggtttggcgcgatgcgcc
gttggccgcgaacgcaagggcaagcacgtagacgacgacgttcacgctatgtggaatatc
cagtcgtcgccgcgagttcgctccgagctcaagcgcaaacaacgcgaagacagcctgctc
gacaagatggacagcctgaacggacgcaagcgcaggaagacagatgggggtgaaatggtc
aagccgcctgatacgtcgtcgtcgacaagcggcgctccgcctctcacggagacgtggcct
ctggtaccgtttactcccgccgcggtcgtttcagacgcacttcctaagatggacctgaag
ctcgaaccacctgcaacgccaccagccacaccgccggcgccaatgtcactttctcgagtg
cccttgcgcgagtcaaaccatgaatcgacgcatgcagcccattccaaatctcgcaactcc
acgtcctcgttcgctacatcgaagccttctgccttcccgccccccgttgccacaaccaca
aagatgctgggagctgggctgcacgattacacgcagatcaaggagtaccttgcggcatcc
ttcgtttgcatactacaacctcgcggatcggccgtcgcaaaggcctgtcttacgagtcgg
ccaaggtcacaacagttaatcccagaaggccgcctctttcattccgttcaggctctgctt
tttgcaatcggatggcagggcggagaaaacggtttgcgacactcggatcgcggaatcgtc
ttcgcggactcgaaggacgaggtgctcctccgcgatctcgtcgccgtcttggcccagctg
tggacgccgcagaagaaggcctgctgggtcgtcgacgtctcggtgttgaactgggagtcc
ttgcccaacttcacgctcgagatcgagcagcgcatcctctggcgcccgcctagctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (42)   

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