KEGG   Aeromicrobium sp. A1-2: C6I20_10060
Entry
C6I20_10060       CDS       T05642                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
aeb  Aeromicrobium sp. A1-2
Pathway
aeb03030  DNA replication
aeb03410  Base excision repair
aeb03420  Nucleotide excision repair
aeb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aeb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C6I20_10060
   03410 Base excision repair
    C6I20_10060
   03420 Nucleotide excision repair
    C6I20_10060
   03430 Mismatch repair
    C6I20_10060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aeb03032]
    C6I20_10060
   03400 DNA repair and recombination proteins [BR:aeb03400]
    C6I20_10060
Enzymes [BR:aeb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C6I20_10060
DNA replication proteins [BR:aeb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C6I20_10060
DNA repair and recombination proteins [BR:aeb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C6I20_10060
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C6I20_10060
   MMR (mismatch excision repair)
    DNA ligase
     C6I20_10060
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C6I20_10060
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 Auto_anti-p27
Other DBs
NCBI-ProteinID: AXT85499
UniProt: A0A3B7DE57
Position
complement(2062374..2064494)
AA seq 706 aa
MATDDELRQRHKELAEMLEEHRQRYYVDDSPTVSDADYDEQMRELEALEAQLPELRTPDS
PTQTVGGYASSSFEAYQHRERLMSLDNAFSVEELESWHARIVREGVDDAEFLCELKVDGL
AISLTYEHGRLTRGVTRGDGRVGEDVTNNVRTIKVIPHELTASDAYPVPAYVEVRGEVFF
PTKEFEEFNTAWAESGKTPFSNPRNAAAGTLRMKDASVTAGRPLSMVCHGLGYREGFTPV
RQSEAYDALEAWGLPTSERAKVVKTLTEVEQFIDYYGEHRHDVVHEIDGVVVKVDQVELQ
RRLGSTSRAPRWAIAWKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMEPIRVAGSTVEMAT
LHNQHEVKRKGVLIGDMVVLRKAGDVIPEIVGPVVALRDGTEREFVMPTECPSCGTPLAP
AREGDKDIRCPNTRSCPSQLRERLSHVGGRGAFDIEVFGWEGATALLDAGVLVDEGGLFA
LTEQELLTVPLYTRAAKKKELEDGAADRLLSANGIALLANLQEAKTQPLWRVLVALSIRH
VGPTAARALATHFATMDAIQAASLETLSAVDGVGPTIAEAVIEWFKVDWHEGIVQQWRDA
GVVMEDERDESIVRTLEGLTVVVTGSLERFTRDSVKETIIAHGGKASGSVSKKTDYVVVG
DNAGSKAEKAEQLGVAILDEEGFERLLADGPADTDARDEDGADGLQ
NT seq 2121 nt   +upstreamnt  +downstreamnt
atggcgaccgacgacgagctcaggcagcggcacaaggagctggccgagatgctcgaggag
catcggcagcgctactacgtcgacgactcaccgaccgtgtccgacgccgactacgacgag
cagatgcgcgagctcgaggcgctcgaggcgcagctgcccgagctgcgcacccccgactcg
ccgacgcagaccgtcggtggctacgcctcgtcgtccttcgaggcctaccaacaccgcgag
cgcctcatgagcctcgacaacgccttctcggtcgaggagctcgagtcgtggcacgccagg
atcgtgcgtgagggcgtcgacgacgccgagttcctctgcgagctcaaggtcgacgggctg
gcgatctcgctgacctacgagcacggccggctcacgcgtggcgtgacccgcggtgacggg
cgggtgggggaggacgtcaccaacaacgtccgcacgatcaaggtcatcccgcacgagctg
acggcatcggacgcctatcccgtcccggcctatgtcgaggtccgtggcgaggtgttcttc
ccgaccaaggagttcgaggagttcaacaccgcctgggccgagtccggcaagaccccgttc
tccaatccgcgcaacgcggcggcgggcaccctgcgcatgaaggacgcctcggtcactgcc
ggacgcccgttgtccatggtgtgtcatgggctcggctaccgcgaaggcttcacgccggtc
cgccagagcgaggcctacgacgcactcgaggcgtggggcctgccgacgagcgagcgggcc
aaggtcgtcaagacgctcactgaggtcgagcagttcatcgactactacggcgagcaccgt
cacgacgtcgtgcacgagatcgacggtgtcgtggtcaaggtcgaccaggtcgagctgcag
cgccggctcgggtcgacctcgcgcgcgccacgctgggccatcgcgtggaagtacccgccc
gaggaggtcaacacccgattgctcgacatccgggtcaatgtgggccgcacaggtcgcgtc
accccctatggcgtcatggagcccatccgggtggctggctcgaccgtcgagatggcgacc
ctgcacaaccagcacgaggtcaagcgcaagggcgtgctgatcggcgacatggtcgtgctg
cgcaaggccggtgacgtcatccccgagatcgtcggcccggtcgtcgcgctgcgcgacggc
accgagcgggagttcgtgatgccgaccgagtgcccttcgtgcggcacgccgctggcccct
gcccgcgagggtgacaaggacattcgctgccccaacacccgctcgtgtccttctcagctg
cgtgaacgcctcagccacgtcggtgggcggggggcgttcgacatcgaggtcttcggctgg
gagggcgccacggcgctgctggacgccggcgtactggtcgacgaaggtggcttgttcgcg
ttgaccgagcaggagctcctcacggtgccgctctacacccgcgcggccaagaagaaggag
ctcgaagacggagcggcggaccggctcctcagcgccaacggcatcgcactgctcgccaat
cttcaggaggccaagacccagccattgtggcgggtcctcgtggcgctgtcgatccgccac
gtcggcccgacggctgctcgcgcgctcgcgacccacttcgccacgatggatgcgatccag
gcggcctcgctcgagacgttgtcagcggtcgacggggtcggcccgacgattgccgaggcg
gtgatcgagtggttcaaggtcgactggcacgagggcatcgtccagcagtggcgggatgcc
ggcgtcgtgatggaggacgagcgtgacgagtcgatagtccgcaccctcgaagggctcact
gtcgttgtgacgggctcgctcgaacgattcacccgtgactcggtcaaggagacgatcatc
gcccacggcggcaaggcgtcgggctcggtgtccaagaagaccgactacgtcgtcgtgggg
gacaacgccggatccaaggccgagaaggccgagcagctgggggtggcgatcctggacgag
gagggcttcgagcgccttcttgccgacggtccggcggacactgacgcccgcgacgaggac
ggtgccgacgggctgcagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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