KEGG   Aeromicrobium yanjiei: GEV26_12135
Entry
GEV26_12135       CDS       T06272                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
aef  Aeromicrobium yanjiei
Pathway
aef03030  DNA replication
aef03410  Base excision repair
aef03420  Nucleotide excision repair
aef03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aef00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GEV26_12135 (ligA)
   03410 Base excision repair
    GEV26_12135 (ligA)
   03420 Nucleotide excision repair
    GEV26_12135 (ligA)
   03430 Mismatch repair
    GEV26_12135 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aef03032]
    GEV26_12135 (ligA)
   03400 DNA repair and recombination proteins [BR:aef03400]
    GEV26_12135 (ligA)
Enzymes [BR:aef01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     GEV26_12135 (ligA)
DNA replication proteins [BR:aef03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     GEV26_12135 (ligA)
DNA repair and recombination proteins [BR:aef03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     GEV26_12135 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     GEV26_12135 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     GEV26_12135 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      GEV26_12135 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH PTCB-BRCT BRCT_2 HHH_3 Auto_anti-p27 HHH_8 zf-ribbon_3
Other DBs
NCBI-ProteinID: QGG42058
UniProt: A0A5Q2MHC2
Position
complement(2465285..2467393)
AA seq 702 aa
MANDDELRQRHKQLSETILEHRERYYVDDSPTVSDAEYDQLMRDLEALEEQMPELRTPDS
PTQTVGGYASSSFEAYEHRERMLSLDNAFSIEELESWHGRLVREGVDDAEFLCELKVDGL
AISLTYENGRLTRGVTRGDGRVGEDVTNNVRTIKVIPHQLKASDDYPVPAYVEVRGEVFF
PTRAFEEFNTAWAESGKTPFSNPRNAAAGTLRMKDASVTASRPLSMVCHGLGYREGFTPT
RQSEAYDALKAWGLPTSDRAKVVPNLAEVEEFIDYYGEHRHDVVHEIDGVVVKVDQVPLQ
RRLGSTSRAPRWAIAWKYPPEEVNTRLLDIRVNVGRTGRVTPYGVMEPIRVAGSTVEMAT
LHNQHEVKRKGVLIGDMVVLRKAGDVIPEIVGPVVALRDGTEREFVMPTECPSCGTPLAP
SREGDKDIRCPNTRSCPSQLRERLTHVGGRGAFDIEVFGWEGATALLDAGVLTDEGGLFA
LTADQLMSVPLYTRAAKKKEIEAGSGERVLSANGIALLKNLETAKTQPLWRVLVALSIRH
VGPTAARALATHFASMDAIREASLAELAAVDGVGPTIAEAVVEWFDVDWHRGIVDQWQAA
GVRMQDERDESIPRTLEGLTIVVTGSLERFTRDSVKEAIIARGGKASGSVSKKTDYVVVG
ENAGSKADKAEELGRPILDEEAFEKLLAEGPPPADDEPAPES
NT seq 2109 nt   +upstreamnt  +downstreamnt
atggccaacgacgacgagctgcgacaacgtcacaagcagctctccgagacgatcctcgag
caccgcgagcgctactacgtcgacgactcgccgaccgtctccgacgcggagtacgaccag
ctcatgcgcgatctcgaggccctcgaggagcagatgcccgagctccgcacgccggactcg
ccgacccagacggtcggcggctacgcctcgtcgtcgttcgaggcctacgagcaccgtgag
cggatgctcagcctcgacaacgcgttctcgatcgaggagctggagtcgtggcacggccgg
ctcgtgcgagagggggtcgacgatgcggagttcctctgcgagctcaaggtcgacggtctc
gcgatctcgctgacctacgagaacgggcgcctgacccggggcgtcacccgcggcgacggg
cgcgtcggcgaggacgtcaccaacaacgtccgcacgatcaaggtcatcccgcaccagctc
aaggcctccgacgattacccggtcccggcgtacgtcgaggtgcgcggtgaggtcttcttc
cccacccgggcgttcgaggagttcaacaccgcgtgggccgagtccggcaagacgccgttc
tccaacccgcgcaacgccgcggccgggacgctgcgcatgaaggacgcgtcggtgaccgcg
agccgtccgttgtcgatggtgtgccacggtctgggctaccgcgagggcttcacgccgacc
cgccagagcgaggcgtacgacgcgctcaaggcgtggggtctgcccaccagcgaccgggcc
aaggtcgtccccaacctggccgaggtcgaggagttcatcgactactacggcgagcaccgc
cacgacgtcgtgcacgagatcgacggcgtcgtggtcaaggtcgaccaggtgccactgcag
cgtcggctcggctcgacgtcgcgcgccccgcggtgggcgatcgcgtggaagtacccgccc
gaggaggtcaacacccggctgctcgacatcagggtcaacgtgggccgcaccggtcgggtc
accccctacggcgtgatggagccgatccgggtcgcgggctcgaccgtcgagatggccacg
ctgcacaaccagcacgaggtcaagcgcaagggcgtcctgatcggcgacatggtcgtgctg
cgcaaggccggcgacgtgatccccgagatcgtcggcccggtcgtggccctgcgcgacggc
accgagcgcgagttcgtcatgcccacggagtgcccctcgtgcggcaccccgctggcgccg
tcacgcgagggcgacaaggacatccgctgcccgaacacgcggtcgtgcccgtcccagctg
cgggagcgcctgacgcacgtcggtgggcgcggcgcgttcgacatcgaggtgttcggctgg
gagggtgccacggcgctgctggacgccggggtgctcaccgacgagggtggcctgttcgcg
ctgaccgccgatcagctcatgagcgtcccgctctacacccgcgcggccaagaagaaggag
atcgaggccggctcgggtgagcgggtgctgagcgccaacggcatcgcgctgctgaagaat
ctcgagaccgccaagacgcagccgctgtggcgggtgctcgtggccctgtcgatccggcac
gtcgggccgaccgccgcccgcgcactcgcgacccacttcgcctcgatggacgcgatccgt
gaggcctccttggccgagctcgcagccgtcgacggtgtcggcccgacgatcgccgaggcg
gtcgtcgagtggttcgacgtcgactggcaccgcggcatcgtcgaccagtggcaggccgcg
ggcgtacgcatgcaggacgagcgcgacgagtcgatcccgcggaccctcgagggcttgacg
atcgtggtgacgggctcgctcgagcgattcacgcgtgactcggtcaaggaggcgatcatc
gcgcgcggcggcaaggcctcgggctcggtgtccaagaagaccgactacgtcgtggtgggt
gagaacgccggctccaaggccgacaaggccgaggagctcggacgcccgatcctcgacgag
gaggccttcgagaagctgctcgccgaagggccgccgccggccgacgacgagccggccccg
gagtcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (32)   

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