KEGG   Aeromonas encheleia: NCTC12917_03162
Entry
NCTC12917_03162   CDS       T06531                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ael  Aeromonas encheleia
Pathway
ael03030  DNA replication
ael03410  Base excision repair
ael03420  Nucleotide excision repair
ael03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ael00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NCTC12917_03162 (ligA)
   03410 Base excision repair
    NCTC12917_03162 (ligA)
   03420 Nucleotide excision repair
    NCTC12917_03162 (ligA)
   03430 Mismatch repair
    NCTC12917_03162 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ael03032]
    NCTC12917_03162 (ligA)
   03400 DNA repair and recombination proteins [BR:ael03400]
    NCTC12917_03162 (ligA)
Enzymes [BR:ael01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NCTC12917_03162 (ligA)
DNA replication proteins [BR:ael03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NCTC12917_03162 (ligA)
DNA repair and recombination proteins [BR:ael03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NCTC12917_03162 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NCTC12917_03162 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     NCTC12917_03162 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NCTC12917_03162 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH DZR_2 zf-NADH-PPase
Other DBs
NCBI-ProteinID: VEG97556
UniProt: A0A448KZ43
Position
1:complement(3420198..3422204)
AA seq 668 aa
MSEILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSV
RVGGQPLSAFRQVRHEIPMLSLDNVFSSEELQAFEQRMRDRLKREVIFQFCCEPKLDGLA
VSLLYVEGQLVQAATRGDGATGEEITDNVRTIKAIPLTLRGTGWPARLEVRGEVFMPKAG
FAAMNEKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLGDSHFG
RLCQLKEWGLPMSAEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELG
FVARAPRWATAHKFPAEEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVAAQRPADARAILFPTQCPVCGSAVERLEGE
VVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLTAIQ
LAGLERMGPKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLEALLAAGIHWPAIEKKAAAEQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITVWTEE
ELQAAIQP
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgagcgaaatcctctcccgccaccgtcaactgtgtgagctgctgatcgaatatggtcat
cagtactatgtgctggacaatcccaccgtgccggacgccgaatacgatcggctgatgcgc
gaattgattgcgctggaggccgagcatcccgagttgaaaaccccggcctcacccagcgtg
cgggtcggcggccagccgttgtctgccttccggcaggtgcgccacgagatccccatgctg
agtctggacaacgtgttcagcagcgaggagctgcaggccttcgagcagcgcatgagggat
aggctcaagcgcgaggtgatctttcagttttgctgcgagcccaagctggatggcctggcg
gtcagcctgctctacgtggagggccagctggtgcaggcggcgacccggggcgatggcgcc
accggtgaggagatcaccgacaacgtgcgcaccatcaaggccatcccgctcaccctgcgg
ggcacgggctggcccgcccggctggaggtgcgcggcgaggtattcatgcccaaggccggt
ttcgcggcgatgaacgagaaggcgctggccgccggcgagaaggtgttcgtcaacccgcgc
aacgccgcggcaggcagcctgcgccagctcgattcccgcatcaccgccagccgccccctg
agcttctatgcctacggggtcggggtgggcggcgagctgctgggggattcccacttcggg
cggctgtgccagctcaaggagtggggcctgcccatgagcgccgaggtgaagctcaaggag
ggtgccgccggctgtcaggcgttccatgacgacatcctggctcgccgtggcgagctgccc
tacgagatcgacggcgtggtctacaaggtcgacgccatccccctgcaggaggagctcggc
ttcgtggcgcgcgccccacgctgggccacagcgcacaagttcccggcagaggaggagatg
accctgctggagaacgtcgagttccaggtcggccgcaccggtgccgtgaccccggtcgcc
aagctcaaacccgtgtttgtcggcggcgtcaccgtctccaacgccaccctgcacaatgcc
gacgagattgaacgcctcggcgtcatgatcggcgacaccgtgatcgtgcgccgggcgggg
gacgtgatcccgcagatagtggcggtggtggcggcccagcgccctgcggatgcccgcgcc
atcctgttccccacccagtgccctgtctgtggctcggcggtggagcggctggagggggag
gtggtgacccgctgctccggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cacttcgccgcccgtcgtgccatggacgtggatggcctgggggacaagatagtggagcag
ctggtggacaaggggctggtgaagaccccggccgatctgttcagcctgaccgccatccag
ctcgccgggctggagcggatggggccgaaatccgcgctcaacctggtggcggccatcgat
gcggcgcgcagcaccacactgccgcgcttcctgtttgccctcggcatccgcgaggtgggg
gaggcgaccgccctcaacctcgccaaccacttcctcaccctggatgccctgcgcgccgcc
tcggtggagcagttgctcgaggtggccgacgtgggcgacatagtggccaagcatgtctac
tacttcctgcgccagccccacaacatcgaggtgctggaggccctgctggcggccggtatc
cactggccggctatcgagaagaaggccgccgccgagcagcccttcgccggcaagaccttc
gtgctgaccggcaccctgaccaccctgtcacgcaacgatgccaaggcggccttgcaggcg
ctgggggccaaggtggcgggctcggtctccgccaagaccgacgtgctggtggccggcgaa
gccgcaggctccaagctcgccaaggcgcaggagctcggcatcaccgtctggaccgaagag
gagttgcaggcggcgatccagccttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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