KEGG   Alistipes finegoldii: Alfi_2517
Entry
Alfi_2517         CDS       T02133                                 
Name
(GenBank) Holliday junction DNA helicase subunit RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
afd  Alistipes finegoldii
Pathway
afd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:afd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Alfi_2517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afd03400]
    Alfi_2517
Enzymes [BR:afd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Alfi_2517
DNA repair and recombination proteins [BR:afd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Alfi_2517
    RecFOR pathway proteins
     Alfi_2517
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 AAA_3 NB-ARC AAA_22 AAA_16 Mg_chelatase nSTAND3 Sigma54_activat Rad17 TIP49 DUF815 AAA_14 Sigma54_activ_2 RNA_helicase ABC_tran TsaE NTPase_1 AAA_18 bpMoxR AAA_PrkA AAA_24 AAA_28 NACHT AAA_19 AAA_33 KAP_NTPase AAA_17 IstB_IS21 AAA_7 AAA_11
Other DBs
NCBI-ProteinID: AFL78785
UniProt: I3YP67
Position
complement(2848121..2849128)
AA seq 335 aa
MSIVRNTESDLEFENKIRPQELETFSGQDKIVDNLRIFIKAALMRGDSLDHVLLHGPPGL
GKTTLANIISNEMNAQLRVTSGPVLDKPGDLAGLLTSLNPGDVLFIDEIHRLSPIVEEYL
YSAMEDYKIDIVLDKGPSARSIQIELAPFTLIGATTRSGLLTSPLRARFGIQCHLEYYDA
PVLAGIVKRSARILDVSIDDDAAHEVALRSRGTPRIANALLRRVRDFAMVKGEGHIDLEI
TQIGLAALNIDSRGLDQMDNKILGTIIEKFGGGPVGLNTIATAVGEDAGTIEEVYEPFLI
KEGFLKRTPRGREATELAYRHMGFTPPGGSDTLLF
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgtctatcgtacgcaacaccgagagcgatctcgaattcgaaaacaagatccgcccgcag
gagttggaaaccttctccgggcaggataaaatcgtcgataatctccgcatcttcatcaag
gcggcgctcatgcgcggcgactcgctcgaccacgtactgctgcacggccctccgggactg
ggaaaaacgaccctcgccaacatcatctccaacgagatgaacgcgcagctgcgcgtcacg
tcgggtcccgtattggacaagccgggcgatctggcggggctgctcacgagtctcaatccg
ggcgacgtgctcttcatcgacgaaatccaccggctcagtccgatcgtcgaggagtatctc
tactcggccatggaggattacaaaatcgacatcgtactcgacaaaggcccttcggcgcgt
tcgatccaaatcgagctggcgcccttcacgctcataggcgccaccacgcgcagcggcctg
ctgacctcgcccctgcgggcgcgcttcggcatccagtgtcatctggaatactacgacgct
ccggtgctggccggcatcgtcaaacgctcggcgcgcattctggacgtctcgatcgacgac
gacgcggcgcacgaggtggcgctccgctcgcgcggcacgccccgaatcgccaacgcgctg
ctgcgccgggtgcgcgacttcgccatggtcaagggcgaagggcacatcgacctcgaaatc
acgcagatcggactcgcggcgctcaacatagactcgcgcggactcgatcagatggacaac
aagattctcggaacgatcatcgaaaagttcggcggcggtcccgtaggactgaacaccatc
gccaccgccgtgggcgaggacgccggaacgatcgaggaggtttacgagccgttcctgatc
aaggaaggcttcctcaaacgcacgccccgcggccgcgaagccaccgaactggcgtaccgc
cacatgggattcactccgcccggcggaagcgacaccctgctgttctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (43)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (34)   
   Pfam (34)   
All databases (87)   

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