KEGG   Acidithiobacillus ferrivorans: Acife_1285
Entry
Acife_1285        CDS       T01595                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
afi  Acidithiobacillus ferrivorans
Pathway
afi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:afi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Acife_1285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afi03019]
    Acife_1285
Enzymes [BR:afi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Acife_1285
Messenger RNA biogenesis [BR:afi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Acife_1285
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 AAA_22 AAA_19 P-loop_SecA HEM4 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AEM47440
UniProt: G0JPW5
Position
1285937..1287196
AA seq 419 aa
MSSFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPI
LHKLSATADTAARGPSSVRALILVPTRELAAQVEESVQLYGRYLSLRSLVLIGGVKINPQ
MQKLRRSVDVLVATPGRLLDHIQQRSVDLSRVEILVLDEADRMLDMGFIRDIRRILAVLP
KKRQNLLFSATFSPEIRALADGLLNNPASVEVASRNATADNVAQRVFAVDQDRKRELLAH
LIEEHQWGQVLVFTRTKHGADRLAKHLSQDGVQAMAIHGDKSQGARTRALAEFKEGKVRV
LVATDIAARGIDISDLPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ
DVEKLLRRSFDREVVVGFEPRQPFASHAPSSAPRRPAQAAGRGRPGSGAAPSGRARRTY
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgtcatcttttgaatcccttgggctttctgagcccatttggcgtgcagctgccgagcgc
ggttacacctccccaacccccattcaggaacaggccatcccggtggttatgtctggtgtc
gatctgttggccggcgcgcagacgggtaccggcaagacggctgcgtttgccatgcccatt
ctgcacaaactgtccgccaccgcagataccgcagcgcgtggtccttccagtgtgcgtgcg
ctgattctggtccccacccgcgaactggcggcgcaggtagaggagagcgtgcagttgtac
gggcgctatctttccctgcgctcgctggtgctcatcggtggtgtcaagatcaatccgcag
atgcagaagttgcgtcgtagtgtagacgtattggtcgctacccccggtcgcctgctggat
cacatccagcagcgcagcgttgacctctctcgtgtcgaaatcctggtgcttgacgaagcc
gatcgcatgctcgacatgggctttatccgcgacattcggcgtattcttgcggtgttgccg
aaaaaacgccagaacctgctcttttcggcgactttttcgccagaaatccgtgctctggcc
gatggcctgctgaataacccggccagcgtcgaggtcgcatcgcgcaatgccaccgctgac
aatgtcgcgcagcgggtttttgccgtcgatcaagatcgcaagcgcgaactcctcgcgcat
ctgattgaagaacatcaatgggggcaggtactggtttttacccgcaccaagcatggtgcc
gatcgactcgccaagcacttatcccaggacggtgtgcaggctatggctatccatggcgac
aagagccagggtgcccgcacccgcgctctggcggagttcaaggaaggtaaagtacgggta
ttggtcgcgacggatatcgctgcccgcggcatcgatatcagtgatttgccccacgtggtg
aattttgaactcccccatgtgcccgaggattatgtccatcgcatcggacggactggtcgc
gctggcaacaatggccaggcggtatcgctggtgagcagtgaggagcgtaagcagttgcag
gatgtggaaaagctgctgcgccgctcctttgaccgggaggtcgtcgtcggcttcgagccg
cgccaacccttcgccagtcatgcgccgtcatcggctccgcgccgtccggcgcaagccgca
gggcggggccgacccggttcaggggcggcgccttcgggccgtgcccgccgcacctactaa

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