KEGG   Acidithiobacillus ferridurans: AFERRID_09710
Entry
AFERRID_09710     CDS       T05847                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
afj  Acidithiobacillus ferridurans
Pathway
afj02020  Two-component system
afj02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:afj00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AFERRID_09710
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AFERRID_09710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:afj03021]
    AFERRID_09710
Transcription machinery [BR:afj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AFERRID_09710
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: BBF64753
UniProt: A0A2Z6ILX2
Position
complement(966627..968054)
AA seq 475 aa
MKQGLELKLGQHLAMTPQLQQAIRLLQLSTVDLQQEVQGMLESNPLLDEETGDEGGGGSI
PETVELPSEDRQLDLAAENVLPDELPVDSQWDDIFDMGTPGSGNGSDEELPDFESRNSRT
QSLQDYLRWQADLTHFTADERNMAELIIDAIDERGYLADSLEDLAVNMNVQEDALLAVLL
RVQDFDPPGVGARDLSECLLLQLKQMAEKEDAHVLLAQRIVKDHLQALGRHDYPRLCAVL
GVDEAALRAAMALISALNPKPGEDVGTESTEYVIPDVIVRWSGSRLRTDLNPEAMPKLRI
NRHYADMAGGKDAAHKYIQDQLNEARWFIKSLQSRQDTILKVARAIVERQKDFFANGPES
MRPMVLRHIADAVDMHESTVSRVTNQKYMITPRGLYEFKYFFSSHVGTDSGGSASATAIR
ALLIKMTQAEDAQHPLSDAEIARVLADQGIQIARRTVAKYREAANVPPASQRRRL
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgaaacaaggcttagaactcaagctcggccagcatctggccatgacgccgcaactgcaa
caggcgattcgtctgctgcagttgtctacggtcgatctgcagcaagaggttcaaggcatg
ctggagagcaacccgctgcttgacgaagagaccggagacgaaggcggtggcgggtcgatc
ccggagaccgttgaacttccttccgaagatcgccagttggatctggcggctgagaatgtc
ctgcctgacgagttgccggtagacagccagtgggacgacatcttcgacatgggaaccccg
ggctccggtaatggttccgacgaggagctgccggattttgaatcgcgcaacagccgcacc
cagagcctgcaggattacctccgctggcaggccgacctgacgcacttcactgctgacgaa
cgcaacatggcggagttgatcatcgacgccattgatgagcgtggttatctggcagacagc
ctggaagacctcgccgtcaatatgaatgtgcaggaggatgcgctgctggccgtgctgctc
cgtgtgcaggacttcgacccgccgggtgtcggcgcgcgcgatctcagcgagtgcctcctg
ctgcaactgaagcagatggcggaaaaagaagacgcgcacgtgttgctggcccagcggatt
gtgaaggaccatctgcaagcgttgggccgtcatgattacccgcgtttgtgcgcggtgctg
ggcgtggatgaagcggcattgcgcgcggcgatggcgctgatttccgcactgaaccccaag
ccgggtgaagatgtgggcaccgagagcaccgagtatgtgatccccgatgtgatcgtgcgc
tggtccggcagccgcctgcgcaccgatctgaatcccgaggccatgcccaaattacgcatc
aatcgtcactatgccgatatggcgggtgggaaagacgcggcgcataaatacatccaggat
cagctgaatgaagcgcgctggtttatcaaaagcctgcaaagccgccaagacaccatcctg
aaggtggcgcgcgccattgtcgaacgacagaaggatttttttgccaacgggccagaatcc
atgcggcccatggttctgcgtcacatcgccgatgctgtggatatgcacgagtctacggtg
tcgcgggtcaccaaccagaaatacatgatcacaccccgcggcctctacgagttcaaatat
tttttttccagtcatgttggtaccgacagcgggggctctgcgtcggccactgccattcgc
gcgttgctcatcaagatgacgcaggcggaagacgcacaacaccccctcagcgatgcggaa
attgcccgggtgctggccgatcagggcattcagatcgcgcggcgaacggtggccaaatac
cgcgaagcggccaatgtccctccggcgagccagcgccgtcgtttgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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