KEGG   Alcaligenes faecalis JQ135: AFA_11555
Entry
AFA_11555         CDS       T05446                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
afq  Alcaligenes faecalis JQ135
Pathway
afq02024  Quorum sensing
afq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:afq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AFA_11555
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AFA_11555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afq03019]
    AFA_11555
   03036 Chromosome and associated proteins [BR:afq03036]
    AFA_11555
Messenger RNA biogenesis [BR:afq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AFA_11555
Chromosome and associated proteins [BR:afq03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AFA_11555
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ASR90031
UniProt: A0A0A2N0C2
Position
complement(2500103..2500339)
AA seq 78 aa
MSNKGQILQDPFLNALRKEHIPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVTLAADEQAE
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaataaagggcaaattctacaagacccgtttttgaacgcgctgcgcaaggagcat
atccctgtgtcgatctacctggtcaacggcatcaagctgcaaggtcagatcgagtccttc
gatcagtatgtcgtactgctgcgcaataccgtcactcaaatggtgtataagcacgcgatc
tctaccgtcgttcctgcacgccctgttactttggctgcggatgagcaggctgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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