KEGG   Acidithiobacillus ferrooxidans ATCC 23270: AFE_3101
Entry
AFE_3101          CDS       T00810                                 
Symbol
uvrD
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
afr  Acidithiobacillus ferrooxidans ATCC 23270
Pathway
afr03420  Nucleotide excision repair
afr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AFE_3101 (uvrD)
   03430 Mismatch repair
    AFE_3101 (uvrD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afr03400]
    AFE_3101 (uvrD)
Enzymes [BR:afr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AFE_3101 (uvrD)
DNA repair and recombination proteins [BR:afr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AFE_3101 (uvrD)
   MMR (mismatch excision repair)
    Other MMR factors
     AFE_3101 (uvrD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30
Other DBs
NCBI-ProteinID: ACK79504
UniProt: B7JAK5
Position
complement(2785660..2787789)
AA seq 709 aa
MSEWSALNPRQMEAVTLPSGPALVLAGAGSGKTRVLTSRIAHLLEGDVYPGAILAVTFTN
KAARAMRGRLDGMVAMDLRALWMGTFHGIAHRLLRMHHEVLGLPADFQVLDADDSQRLLR
RIMREAQMDEKQWPPRAMAGRIGRWKDEGWGPEQVQQYEGPAAAPFIPIYSAYEAAKKRS
GLVDFGDLLLYALRLWESPEILDHYQRRFQHILVDEFQDTNAVQYAWLKGLARHGQIFAV
GDDDQSIYAWRGARVENLLRFGEDFAGARVVRLEQNYRSTAPILQAANAIIAHNSDRLGK
TLWTAEPGGESIQLYTAYNEFDEARYVVGRVQQWLDDGGRRADCAILYRSNAQSRAFEEV
LVREGMPYRVYGGLRFFERAEIKDTLAYLRLTANRHDDASFERVVNVPARGIGAVSVERL
RNLARERGLSLWQAAGELGQPKISAFLNLVDDLAARTAEADLGERVEMVLAHTGLREWHG
REGDRAEGRLENLDELINAARGYAQDWSADPNLGDLAPQPGNMLSEFLTHAALEAGDGAG
DAWEDCVQLMSLHSAKGLEFPLVFLVGLEEGLFPHQRSLEDPQGLAEERRLCYVGMTRAM
RLLVISHAESRRLHGSERMTIPSRFLREIPRELLRELRPRARVSRPAMPVRVQAPEMPYP
LGARLQHPVFGEGMVLDYEAGGRQGRIQVQFASGSKWLALGVVALERLP
NT seq 2130 nt   +upstreamnt  +downstreamnt
gtgtctgaatggtctgctctcaatccccgccagatggaggcggtgaccctgccgtctggt
ccggcgctggtgctggcgggggcaggatcgggaaaaacgcgggtgctgaccagtcgtatc
gcccatttgctggaaggggacgtataccctggcgcaattcttgccgtgaccttcaccaac
aaggcggcacgcgctatgcgcgggcgattggatggcatggtggccatggacttgcgggcc
ttgtggatgggcaccttccacggcatcgcccaccgtctgttgcgcatgcatcacgaagtg
ctgggcctgcccgcagactttcaggtcctggatgccgacgatagccagcgtctgctgcgg
cggatcatgcgtgaagcgcagatggatgagaagcagtggccgccgcgcgccatggccggg
cgtatcggccgctggaaagacgagggttgggggccggagcaggtacaacaatatgaaggt
ccggcagccgcgcccttcattcccatctacagcgcctatgaagcggctaaaaagcgctcc
gggctggtggacttcggtgatctgttgctctacgccctgcgtctctgggaatcgccggaa
atcctcgatcattatcagcgccgttttcagcatattctggtggatgagtttcaggacacc
aacgcggtgcagtacgcttggctgaaggggctggctcggcatgggcagatttttgcggtc
ggcgacgatgaccagtccatttatgcctggcgaggcgcacgagtggagaatctgctccgc
ttcggcgaagactttgccggggcgcgggtggtgcgcctggagcagaactaccgttctacg
gcacccatcctgcaggcggcgaatgccattatcgcccacaattccgatcgcctcggcaaa
accctgtggacggcggaaccgggcggtgaatccattcaactctacaccgcctacaacgaa
tttgacgaggcgcgctacgtggtgggccgcgttcagcaatggctggacgatggtgggcgg
cgtgcggactgcgccatcctctaccgctccaatgcccagtcgcgggcctttgaagaagtg
ctggtgcgtgaagggatgccctatcgggtctatggtggcctgcgctttttcgagcgagcg
gagattaaggatactctggcctatctacgccttaccgccaaccgccacgatgatgcgtct
ttcgaacgggtggtgaacgtgccggcgcggggcattggtgcggtcagtgtcgagcgtctg
cggaatctggcccgcgagcgcggcctctcgctctggcaggccgccggcgaactcggtcag
ccgaaaatcagcgcgttcctcaatctggtggatgatcttgccgcacgaacggcggaggcg
gatctcggcgagcgggtggagatggtactggcccacaccggcctacgtgaatggcacggc
cgcgagggcgaccgcgccgaaggccgcctggagaatctggatgaactgatcaatgcggca
cgcggctatgcccaggactggtccgccgaccccaatctcggtgatcttgcgccgcaaccg
gggaatatgctctcggagttcctgacccatgctgccctggaagccggggatggtgccgga
gacgcctgggaggactgtgtacagttgatgagcctgcacagcgccaagggtctggagttc
ccgctggtgtttctggtggggctggaagaggggctgtttccccatcagcgctctctggaa
gacccccaggggctggctgaggaacggcgcctgtgttacgtcggcatgacccgggccatg
cgcctgctggtcatcagccatgccgagagccgccgcctgcacggcagtgagcggatgacc
ataccctcgcgctttctgcgggagattccccgggaactgctgcgggagctgaggccacgg
gcacgggtcagccgacctgctatgccagtgcgagtacaggcaccggaaatgccctatccc
ctgggggcgcgcctccagcacccggtctttggtgagggaatggtgctggattacgaggct
ggcggccgccagggccggattcaggtgcagtttgcctcgggaagcaaatggctggcgctg
ggggtggtggctttggagcggttaccttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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