KEGG   Allofrancisella frigidaquae: E3E15_02960
Entry
E3E15_02960       CDS       T06608                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
afri  Allofrancisella frigidaquae
Pathway
afri03030  DNA replication
afri03430  Mismatch repair
afri03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:afri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    E3E15_02960 (dnaE)
   03430 Mismatch repair
    E3E15_02960 (dnaE)
   03440 Homologous recombination
    E3E15_02960 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afri03032]
    E3E15_02960 (dnaE)
   03400 DNA repair and recombination proteins [BR:afri03400]
    E3E15_02960 (dnaE)
Enzymes [BR:afri01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     E3E15_02960 (dnaE)
DNA replication proteins [BR:afri03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     E3E15_02960 (dnaE)
DNA repair and recombination proteins [BR:afri03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     E3E15_02960 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: QIV94373
UniProt: A0A6M3HT54
Position
635829..639302
AA seq 1157 aa
MISHLRVHTGFSVIDSTVRLNELFETAKQKDIVALALTDVCNLFAAVKFYKQALKTGIKP
IFGVELKIDTQLGICDLILLAENNQGYQNIVNLISRAYQEADRVGSIPLVPKKWFNQMDF
KNTICLSGGQNGELGKAILSKDSSKILEVISEYISIFGKDNYFIEIHKLGYENEGTYVEK
ALELAHEKGLLAVATNLTVFMNSEDYDIHEIRACINEKTTILDETRKSRFTQEQYLKSSQ
EMHETFGGLPVLLTNTLAIARRCNVTFELGKPSLPTVGIPEGLTQREYFSKICYKGLEKR
LEKILSLKSADKHEHIIKTYKERLQREIDIICDMGFPGYFLIVEDFIRWAKENDIPVGPG
RGSGAGSLVAYSLSITDIDPLSYGLLFERFLNPERVSMPDFDIDFCIQGRDRVIKYVEQR
YGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETPGTTFKKILHEGEPL
YEEMKSDEDVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISEFAPIYCEDKGGDIVTQF
DKGDVEDVGLVKFDFLGLKNLTIINNTIKSINAKKKAGEPFLNISDIPLDDKLTYKLLQA
GNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIPIFIDRKHGRKQISYL
HPLLEVVLKETYGIPVYQEQVMQMAQKLAGYTLGAADLLRRAMGKKKPEEMEQQRKIFKE
GAKKYNNIESSLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAWLKAHYPDEYMAALMS
GDMGNTDQLVKFILDCKNMGISVQAPNINTSVYACIAVSKGTILLGLGAIKGLGGEAIKS
ILTERELAGKFSSIFDLCRRVDLRKVNKKALEALCFAGAINGISKNRATAFNSIEKAIKN
AGYVNEMNAAGQDDLFGFTEQESDTDSEFEKECFAEEWSLRELLINEKKALGMYFTGHIL
DEESHWRNHVSFSDLEKIQRSNMDGNSVRIIASMITPAIRRKTKTGRILYIINIDDEFDR
VDCLVSEDIFASVKDSISVDDIVVVEGKVSRDIQRERNKLSVDKVQPISQYIDENFSKVR
LTLKGENINPTNLIKVLNNFKNNINLHNEQKSNILEIVISLDGVEANFDTLQKPFSIYEF
VNDISSLIAEGSTVSLG
NT seq 3474 nt   +upstreamnt  +downstreamnt
atgatttctcaccttagggttcatacagggttttctgttattgacagtacagttaggcta
aatgagctttttgaaacagctaaacaaaaagatatagttgctttagctttgactgatgta
tgtaatttatttgcagctgttaaattttataaacaagccttaaaaacaggcatcaaacca
atatttggtgttgagctaaaaatagatactcagttggggatatgtgatttaatattacta
gctgaaaataatcaagggtatcaaaatattgttaaccttatttcaagagcatatcaggag
gctgatagagtaggctcaattcctttagtgcctaaaaaatggtttaatcaaatggatttt
aaaaatactatttgtttaagcggcggtcaaaatggcgagttaggtaaagctatactttca
aaagattctagtaaaattttagaagttatatcagagtatattagtatctttggcaaagat
aattattttatagaaatccataaattaggttatgaaaatgaaggcacatatgttgaaaaa
gctttagaattggcccatgaaaaaggtttgcttgctgtagctactaatctaacagtattt
atgaattcagaagattatgatattcatgaaattagagcttgcattaacgagaaaacaact
atcttagatgagactagaaaatctaggtttacccaagaacaatatttaaagtcatcacaa
gaaatgcacgagacctttggtggtttaccagtattgttaaccaatactttagctatagca
aggcgttgtaatgttacatttgaacttggtaaaccatcattacctactgttggtatccca
gaaggtttaacacagagagaatatttttcaaaaatatgttataaaggactagaaaagcgt
ctagaaaaaatattatcgcttaagtctgcagataaacatgagcatataattaaaacttat
aaagaaagattacaaagagaaatcgatatcatttgtgatatgggttttccggggtatttt
cttatagttgaggatttcatacgttgggcaaaagaaaatgatattccagtaggacctgga
cgtggttcaggggctggttcattagtagcttattctttatcgattacagatattgatcct
ttatcatacggattactttttgaaaggtttttgaatcctgaaagggtatcaatgcctgat
tttgatatagatttttgtatccaaggtagagatagagtaatcaaatatgttgaacaaagg
tatggtaaggaaagcgtagcccagattattacgtatggaacaatggctgctaaaggtgtt
gtgcgcgatgtagttagagttatggggcaaagttttggttttggtgataggatagctaaa
cttattccagaaacacctggtacaacttttaaaaaaattcttcatgaaggtgagcctttg
tatgaggaaatgaaatctgacgaggatgttgcagaaatagttgaaaaagcccaaaaactt
gaaggcttaccacgtagtttaggtaaacatgcagcgggtattgttatatcaccaacagtt
atatctgaatttgctccgatatactgtgaggacaaaggtggggatattgttactcagttt
gacaaaggcgatgtagaagatgttggcttagtcaagtttgactttctaggtttaaaaaac
ttaacgataataaataacactattaaaagtattaatgctaagaaaaaagctggtgaacct
tttttaaatatttctgatattcctttagatgacaaattaacctataaacttttacaagct
ggtaatactacaggaatatttcagcttgaatcacaggggatgcgtcagatagttaaagat
cttggcacttcaaattttgaagagattattgcactagttgcgctataccgaccaggacct
atggaaaatatcccaatatttatagatcgaaaacatgggcgtaagcagatttcttattta
catcctttacttgaagtggtccttaaggaaacctacggtataccagtttatcaagagcaa
gtaatgcaaatggcacaaaaactagctggctacactctcggagcggcagaccttttacgt
agagcaatgggtaaaaagaaaccagaagagatggagcaacaacgtaagatttttaaagaa
ggtgctaaaaaatacaataacattgagtctagcttagctgatgaaatatttgaccagatg
gaagcttttgctggttatggttttaataaatcccatgctgctgcatatgctttgatagct
tatcaaactgcttggttaaaagcgcattatcctgatgaatatatggctgctctcatgtct
ggtgatatgggtaatactgatcagttagttaagtttattctagattgtaaaaacatggga
atatcagtccaagcccctaatataaacactagtgtatatgcttgtattgctgtttcaaaa
ggtactatattacttggcttaggagctataaaagggcttggtggagaagctatcaaaagt
attcttacggaacgggagttagcaggtaaattcagttcaatttttgatttatgtcgtaga
gtagatttacgtaaagtcaataaaaaagctcttgaggcgttatgttttgctggcgctata
aatggtatttcaaaaaacagagctacagcttttaattctatagaaaaagctataaaaaat
gccggttacgtcaacgagatgaatgctgctggtcaagatgatttgtttggctttacagaa
caagaaagtgatacagattctgaatttgaaaaagaatgtttcgcagaagaatggagctta
agggaattattaataaatgaaaaaaaagctttgggcatgtactttactggacatattctt
gatgaagaaagtcactggcgtaatcatgtaagttttagtgaccttgaaaaaatacaacgc
tcaaatatggatggaaattcagttagaattattgctagtatgataaccccggctattcgt
agaaagactaagactggtcgaattttgtatattatcaatattgatgatgaatttgataga
gtagattgtctagttagtgaagatatatttgcatctgttaaagacagtattagtgttgat
gatatagttgtggtagaaggtaaagttagccgagatatacagcgagagagaaataagcta
agtgttgataaagttcagccaatttctcaatatatagatgaaaattttagtaaagttagg
ctaacgttaaagggtgaaaatataaaccctactaatctgataaaagtccttaataacttt
aaaaataatatcaacctccataatgaacaaaaatcaaatattttagagatagttatatct
ttagacggagtagaagctaattttgatactttacagaaacctttctcaatatatgagttt
gttaatgatattagtagcttaatagcagaaggtagtacggttagtttggggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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