KEGG T04000: AFK25

Anoxybacillus gonensis: AFK25_05920

Entry

AFK25_05920       CDS       T04000

Name

(GenBank) polynucleotide phosphorylase

K00962

polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Organism

agn Anoxybacillus gonensis

Pathway

agn03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:agn00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AFK25_05920
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:agn03019]
    AFK25_05920
   03016 Transfer RNA biogenesis [BR:agn03016]
    AFK25_05920
Enzymes [BR:agn01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AFK25_05920
Messenger RNA biogenesis [BR:agn03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AFK25_05920
Transfer RNA biogenesis [BR:agn03016]
Prokaryotic type
  tRNA degradation factors
   AFK25_05920

SSDB

Motif

Pfam:

RNase_PH RNase_PH_C S1 PNPase KH_1 SPATA25 KorB S1_2 VIT1

Other DBs

NCBI-ProteinID:

AKS38095

Position

1104753..1106861

AA seq 702 aa
MEQEKHVFSIDWAGRPLTVEIGELAKQANGAVLVRYGDTVVLSTATASKEPKSVDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFAEGFRNEVQVVSMVMSV
DQDCSPEMAAMFGSSLALTISDIPFEGPIAGVTVGRVNGEFVINPSVAQMEQSDMHLVVA
GTKDAINMVEAGANEVPEEVMLEAIMFGHEEIKRLIAFQENIAAKVGKEKMEVVLYELDA
QLEADIRARVEGEVKRAVQVPEKLAREAAIEQLKAEVVAAYEQQEADEETIKQVKEILHK
LVKEEVRRLITEEKVRPDGRKVDEIRPLSSAVGLLPRTHGSGLFTRGQTQALSVCTLGAL
GDVQILDGLGIEETKRFMHHYNFPPFSVGETGAMRGPGRREIGHGALGERALEPVIPSEK
EFPYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTILT
DIQGMEDHLGDMDFKVAGTEKGVTALQMDIKIKGLSREILEEALQQARKGRLEILKHMMQ
TISEPRKELSKYAPKILTMQINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISS
VNEDMNQKAKKIIEDIVREVEVGQVYLGKVKRIEKFGAFVELFSGKDGLVHISELAEERV
GKVEDVVSIGDEILVKVTEIDKQGRVNLSRKAVLRDQKEAEQ

NT seq 2109 nt +upstreamnt +downstreamnt
atggaacaagaaaaacatgtgttttcgatcgactgggcaggtcggccgttgaccgttgaa
attggcgaattagccaaacaagcaaacggcgctgtattagtgcgatacggcgatacggtc
gtattaagtacagcgacagcatcgaaagaaccaaagagcgtcgactttttcccattaaca
gtcaattacgaagaacgtttatacgctgttggtaaaattccagggggatttattaagcgt
gaaggacgtccaagtgaaaaagccattttagctagccgtctcatcgaccgtccgattcgg
ccattatttgctgaaggatttcgaaatgaagtgcaagttgtcagcatggtgatgagcgtt
gatcaagactgctcaccagaaatggcggcaatgtttggctcttcgcttgcgttaacgatt
tctgatatcccatttgaaggaccgatcgctggggtgacagttggccgtgtgaacggtgaa
tttgtgattaacccgtctgtcgcacaaatggaacaaagcgatatgcatcttgtcgttgct
ggaacgaaagatgcgattaacatggtggaagcaggggcgaatgaagtaccagaagaagtt
atgcttgaagcaattatgtttgggcatgaagaaattaagcggctcattgcattccaagag
aacattgccgcaaaagttggcaaagagaagatggaagtcgttctgtatgaactcgatgcc
cagcttgaagcggacattcgtgctcgtgtggaaggtgaagtgaaacgcgcggttcaagta
cctgaaaaattagcgcgcgaagcagcaattgaacaattgaaagcagaagttgtagcggcg
tacgaacaacaagaagcagatgaagaaacaataaagcaagtgaaagaaattttacataaa
cttgttaaagaagaagtacgacgcttaattacggaagaaaaagtgcgtccagacggacga
aaagtagatgaaattcgtccgctttcatcagccgttggacttttaccacgcacgcacgga
tcaggcttgtttacacgaggacaaacacaagcgcttagcgtatgtacactcggtgcactt
ggtgatgtgcaaattttagatggacttggtattgaagaaacaaaacggtttatgcaccat
tataacttcccgccattctcagtcggagaaacaggagcgatgcgtggaccaggacgtcgc
gaaattggtcacggagcgcttggcgagcgcgcacttgagccggttattccatctgaaaaa
gagtttccgtacacgattcgcctcgtatcagaagtgttagaatcaaacggttcgacatct
caagcgagcatttgtgcgagcacattggcgatgatggatgcgggtgtgccgattaaagcg
ccagtagctggtattgcgatggggcttgtgaaaagcggtgaacactatacgattttaaca
gatattcaaggcatggaagatcatctcggtgatatggactttaaagtagcagggacagaa
aaaggggtcactgctttacagatggatattaaaattaaaggtttatcgcgtgaaatttta
gaagaagcgttgcaacaagcgcgcaaaggtcgccttgaaattttaaaacatatgatgcaa
acgattagcgaaccgcgcaaagagctatctaaatatgcaccgaaaattttaacgatgcaa
attaatccagataaaattcgtgacgtcatcggtccaagcggaaaacaaattaacaaaatt
attgaagaaacgggcgtaaaaattgatattgaacaagatggaacaatcttcatttcatct
gtaaacgaagatatgaatcaaaaggcgaaaaagattattgaagatatcgttcgtgaagtg
gaagttggacaagtgtacttaggaaaagtaaaacgaattgaaaaatttggtgcatttgtc
gaattgtttagcggaaaagacggtctcgtacacatttcagaattggcggaggaacgcgtc
ggaaaagtggaagatgtcgtttcgatcggcgatgaaattttagtgaaagtaacggaaatc
gataaacaaggccgtgtaaatttatcgcggaaagcggtattgcgcgatcaaaaagaagcc
gagcaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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