KEGG   Agrobacterium tumefaciens H13-3: AGROH133_09485
Entry
AGROH133_09485    CDS       T01432                                 
Name
(GenBank) RNA polymerase sigma factor sigK
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
agr  Agrobacterium tumefaciens H13-3
Brite
KEGG Orthology (KO) [BR:agr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:agr03021]
    AGROH133_09485
Transcription machinery [BR:agr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AGROH133_09485
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 HTH_23 Sigma70_ECF Phage_antitermQ DUF1804 HTH_Tnp_1 HTH_28 HU-CCDC81_euk_2 SdpA HTH_17 MerR_1 CENP-B_N
Other DBs
NCBI-ProteinID: ADY65849
Position
linear:101696..102373
AA seq 225 aa
MTATIPAACFHPANFWPGRRELHFAHALPSHKGQPYIGGARRDVRMQGTEIATLINRVGM
GDRSAFVSLYQATSPKLYAICLKILRDRTEAEEALQEVYIKIWQRALTFAASAGTPSTWL
AAIARNHAIDTIRARKPVGDDIDEAYDLADDSIRNPEQQVVLADEGRRIDNCMQELETVH
AQAVRRAYIEGLSYIELAKELRVPLNTVRTWLRRSLLKLRECMQR
NT seq 678 nt   +upstreamnt  +downstreamnt
atgacagcgaccatccctgccgcctgcttccacccggccaatttttggccgggaagacgt
gaacttcatttcgcgcatgccttgccttcccacaaaggacaaccctatataggaggcgca
agaagggatgttcgaatgcagggtacagagatagcaacgctcataaaccgcgtcggcatg
ggcgaccgctcggcattcgtttccctctatcaagccaccagcccgaagctttatgcgatc
tgcctgaaaatcctgcgtgacaggaccgaagccgaagaagcgcttcaggaagtctatatc
aagatctggcaaagagccctcacatttgcagcaagcgccggcacaccgtcgacgtggctc
gccgcaatcgcccgcaaccatgcgatcgatacgatcagggcgcgcaaacccgtgggcgac
gacattgacgaagcctatgaccttgccgatgacagcatccgcaatccggagcagcaggtc
gttctggccgatgagggtcgcaggatcgacaattgcatgcaggaacttgaaacggttcat
gcgcaggcggtgcgtcgtgcctatatcgaagggctgagctatatcgaactcgccaaagaa
ttgcgggtgccactcaacacggtcagaacctggctgcggcgaagccttctcaaactcaga
gagtgcatgcagcgatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (14)   
   Pfam (14)   
All databases (20)   

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