KEGG T05906: EYD00

Agrobacterium sp. 33MFTa1.1: EYD00_04760

Entry

EYD00_04760       CDS       T05906

Symbol

topA

Name

(GenBank) type I DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

agt Agrobacterium sp. 33MFTa1.1

Brite

KEGG Orthology (KO) [BR:agt00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:agt03032]
    EYD00_04760 (topA)
   03400 DNA repair and recombination proteins [BR:agt03400]
    EYD00_04760 (topA)
Enzymes [BR:agt01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     EYD00_04760 (topA)
DNA replication proteins [BR:agt03032]
Prokaryotic type
  DNA Topoisomerases
   EYD00_04760 (topA)
DNA repair and recombination proteins [BR:agt03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      EYD00_04760 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom

Other DBs

NCBI-ProteinID:

QBJ12764

Position

circular:complement(938881..941565)

AA seq 894 aa
MNVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAK
RMKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDKPVKRVVFNAITKKAV
LDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
ESEIERFVSEEYWNISALLKTPRGDEFEARLVSADGKRLQNRAIKTGDDANRLKALLEGA
TYVVDSVEAKPVKRNPSPPFTTSTLQQAASSRMGFGASRTMQVAQKLYEGIDIGGETVGL
ITYMRTDGVQMAPEAIDAARKAIGEQFGGRYVPEKARFYSTKAKNAQEAHEAIRPTDFNR
TPDQVKRYLDADQLRLYELIWKRGIASQMASAEIERTTVEILASNGGEKAGLRAVGSVIR
FDGFIAAYTDQKEDGEQSDDGDDEGRLPPINERENLAKQKINASQHFTEPPPRYSEASLI
KKMEELGIGRPSTYAATLKTLSDREYIVIDKRKLVPHSRGRLVTAFLESFFTKYVEYDFT
AALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDALNEVLAPLVFPKRE
DGSDPRICQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAEAEAAALNEPKALG
ADPMTGEELTLRSGRFGPYIQRGDGKEAKRSSLPKGWKPEDIDHEKALALINLPRDIGKH
PETGKMISAGLGRYGPFLLHDGSYANLESIEDVFSIGLNRAVTVIAEKQSKGPGRGRSGT
PAALKELGDHPDGGPITVRDGRYGAYVNWGKVNATIPKGQDPASVTLDEALVLIAERIAK
TGTGGKPAKAKKTTAKKADGDAAAKPKATKAKAATKSKTAAKPKAAAKPKKAAE

NT seq 2685 nt +upstreamnt +downstreamnt
atgaatgtcgtcgtcgtagaatctcctgccaaagccaagacgatcaacaagtatcttggc
tcgggctataaggttcttgcatcctttggccacgtcagggaccttcctgccaaggacgga
tcggtgttgcctgaccaggatttcgaaatgtcctgggaagttgacagcgcctccgccaag
cgcatgaaggatattgccgatgcggtaaaatcctccgacggcctctttctggcaaccgac
ccggatcgcgaaggggaagccatttcctggcacgttctcgatcttttgaagaagaagcgg
gttctcggcgacaagccggtgaagcgcgtcgtcttcaacgccatcaccaagaaagcggtg
ctggacgcgatggcgaacccgcgcgacatcgatgtgccgctggtggacgcctatctcgcc
cgccgagcgctcgactatctcgtcggcttcaacctctctccggttctgtggcgcaagctg
ccgggtgcgcgttcggccggccgggtgcagtccgtggcgctgcgtctcgtctgcgatcgc
gaatccgaaatcgagcgtttcgtttccgaagaatactggaacatcagcgcacttttgaag
acaccgcgcggtgacgagttcgaggctaggctggtttcggccgatggcaagcgattgcag
aaccgcgccatcaagaccggcgacgatgcgaaccggctgaaagcgctgctcgaaggcgcg
acctacgtggtggatagcgtcgaggcgaaacccgtcaaacgcaatcccagccctcccttt
acgacctcgacgctgcagcaggcggcttcttcgcggatgggcttcggcgcctcgcgcacc
atgcaggtggcgcagaagctttatgaaggcatcgatatcggcggcgagaccgtcggtctg
atcacctatatgcgtaccgacggcgtgcagatggccccggaagcgatcgatgctgcgcgt
aaggctattggcgagcagttcggtggccgttacgtgccggaaaaagcgcgtttctactct
accaaggccaaaaatgcgcaggaagcgcacgaggcgatccgcccgaccgatttcaaccgc
acaccggatcaggtgaagcgttacctcgatgccgaccagctgcgcctttacgagctgatc
tggaaacgcggtattgcgagccagatggcgtcagccgaaatcgagcgcacaacggttgaa
attctcgccagcaacggcggcgagaaggctggcctgcgcgccgttggctccgtcatccgc
ttcgacggctttatcgccgcttataccgaccagaaggaagatggcgagcagagcgacgat
ggtgacgacgaaggccgtctgccgccgatcaatgagcgcgagaacctcgccaagcagaag
atcaatgccagccagcacttcaccgagccgccgccgcgttattcggaagcgtcgctgatc
aagaagatggaagaactcggcatcggccgtccttccacctatgcggcaacgctgaagacg
ctgagcgaccgcgaatatatcgtcatcgacaagcgcaagctggtaccgcattcgcgtggc
cggctggtgacggctttcctcgaaagcttcttcaccaaatacgtcgagtatgatttcacc
gccgcccttgaagaaaagctcgaccgcatttccgccggcgaactggactggaagcaggtt
cttcgcgatttctggaaggatttcttcgcgcagatcgaagataccaaggaactgcgcgtc
accaacgtgctggatgcgctgaacgaggttctggcgccgctggtgttcccgaagcgcgag
gatggttccgatccgcgcatctgtcaggtttgcggcaccggcaatctgtcgctgaagctc
ggcaaatacggtgcctttgtgggttgctcgaactaccctgagtgcaactatacccgccag
ctgacctccgatggcgcggaagccgaagccgctgctctcaacgagccgaaggcgctgggc
gctgatcccatgaccggcgaggagctgacgcttcgctccggccgtttcgggccctatatc
cagcgcggtgacggcaaggaagccaagcgctcctcgctgccgaagggctggaagcctgag
gatatcgatcacgaaaaggcgttggcgctcatcaacctgccgcgcgatataggcaagcat
ccggaaaccggcaagatgatctcggctggtctaggccgttacggacctttcctgctgcat
gatggttcctatgcgaacttggagagtatcgaggacgtgttctcgatcggcctcaaccgc
gccgtgaccgtgatcgctgaaaagcagagcaagggtccgggacgcggccgtagcggcacg
ccagctgctctcaaggagttgggcgaccaccctgatggcggcccgatcaccgttcgtgac
gggcgctacggcgcctatgtgaactggggcaaggtcaacgccaccattccaaaggggcag
gatccggcatccgtgacgctggacgaggcgctcgtgttgatcgccgagcgcattgccaag
accggcaccggcggcaagcccgccaaggccaagaaaacgaccgccaagaaggccgatggt
gacgccgctgcaaagccgaaggcgaccaaggccaaggcggcgacaaagagcaagacggcc
gccaagccgaaggcagcggccaaacccaagaaggcagcagagtga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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