KEGG   Agrobacterium sp. 33MFTa1.1: EYD00_25735
Entry
EYD00_25735       CDS       T05906                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
agt  Agrobacterium sp. 33MFTa1.1
Pathway
agt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:agt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EYD00_25735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:agt03400]
    EYD00_25735
Enzymes [BR:agt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EYD00_25735
DNA repair and recombination proteins [BR:agt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EYD00_25735
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QBJ16830
Position
p_JBx_073812:complement(485078..486148)
AA seq 356 aa
MKRPAKPLLQNDSLTAKSQPRRRRDPAQPNLPFDPMPDRVEPCLALLKTAPPSGPEWVYE
MKWDGYRLAVHIEPKGVRIITRGGHDWTHRFPAIAAAARDLGVATAILDGEAVVLNGEGR
SDFGALQRSLGGRGGKRASTEAVLFAFDLLYFDGHDLTRTELSVRRHLLGDLLEDATGAI
QLSEEIEADGAELLASACSLGMEGIIAKHRDSPYRSGRTGDWLKIKCVQSESFMIVGYEQ
SAAARGGIGSLLLAARHGHDWVYVGAVGTGFKEKDAAYLKKTLDRLKTKTPVVPLKGRNY
VFAQPTLIAEIEFRGWTDDGNLRHASYKGLREVQDNAAVHELKWVGPGRRLDVIFF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgaaacgtcccgccaagccgctcctgcagaatgacagcctgacggcaaaatcgcagccg
cgccgcaggcgcgatccggctcagcccaatctgccgttcgacccgatgccagatcgcgtc
gagccatgtctggcgctcctgaagacggccccgccgtccggccccgagtgggtctatgaa
atgaagtgggacggctatcggctcgcggtccatatcgagccgaagggtgtgcggatcatt
acccggggcggccacgactggacgcaccggtttcccgctatcgccgcagcggccagggac
cttggagttgcaacagccatccttgacggcgaagcggtggtgctgaacggcgagggtcgc
tccgatttcggcgcgctgcaacgctcgctcggagggcgaggcggcaaacgggcgtcgaca
gaagccgtactcttcgccttcgaccttttgtatttcgatggccacgatctcactcgtacc
gagctgtcggtccgacggcacttgctgggggacctgcttgaagacgcgaccggcgcaatc
cagctgtccgaagaaatagaagcggacggcgctgaattattggcgagcgcgtgctctctc
ggcatggaaggcatcatcgcaaaacatcgtgacagcccttatcgctcgggccggaccgga
gactggctgaagatcaagtgtgttcaaagcgagagcttcatgattgtcggctacgagcag
tcggcggcggcgcgcggcgggattggcagtttgctgctggcggcgagacatggacatgac
tgggtctatgttggcgccgttggaaccgggttcaaggagaaagatgcggcgtatctgaag
aagacactggataggctgaagacgaagacaccggtcgttccgctcaagggcaggaattac
gtcttcgcgcagccgacgctcatcgccgaaatagagttccgtggctggaccgacgatggc
aacctgcgtcatgcgtcctataaaggcctgcgcgaggtgcaggacaatgccgcggtccat
gaactcaaatgggttggtcctggccggcgcctggatgtcatttttttctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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