KEGG   Atlantibacter hermannii: NCTC12129_01200
Entry
NCTC12129_01200   CDS       T05790                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
ahn  Atlantibacter hermannii
Pathway
ahn00740  Riboflavin metabolism
ahn01100  Metabolic pathways
ahn01110  Biosynthesis of secondary metabolites
ahn01240  Biosynthesis of cofactors
ahn02024  Quorum sensing
Module
ahn_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:ahn00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    NCTC12129_01200 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NCTC12129_01200 (ribD)
Enzymes [BR:ahn01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     NCTC12129_01200 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     NCTC12129_01200 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD
Other DBs
NCBI-ProteinID: VDZ72116
UniProt: A0A447LK85
Position
1:1116377..1117480
AA seq 367 aa
MQDEIFMARALKLAQRGRFTTSPNPNVGCVIVRDGEVVGEGFHYRAGEPHAEVHALRMAG
DKARGATAYVTLEPCSHHGRTPPCCDALIAVGVSRVVAAMQDPNPQVAGRGLYRLKQEGI
EVSHGLMMNEAEALNKGFLKRMRTGFPFVQLKLGASLDGRTAMASGESQWITSAESRRDV
QRFRAQSSAILTSSATVLADDPSLTVRWNELDAATQALYPQDQVRMPTRIVIDSQNRVTP
DHKIIHQPGETWLARTQPDDTQWPEGVTQLPVPAHNGHLDLVVLMMLLGKRQINSIWVEA
GAELSGALLQAGVVDEIVLYIAPKLLGNDARGLFTLPGLEKLVDAPSLRFSEIRPVGPDL
CLRLTLQ
NT seq 1104 nt   +upstreamnt  +downstreamnt
atgcaggatgaaattttcatggcgcgggcgctcaaactggcgcaacgcggtcgttttacc
acttctcccaatcccaacgttggctgcgtgatcgtgcgcgatggcgaagtggttggcgaa
ggttttcactatcgcgccggtgaaccccatgctgaagtccatgcattgcggatggcgggc
gataaagcccggggtgcgacagcctatgtgacgctggaaccttgcagccatcacgggcgt
acgccgccgtgctgtgacgcgctgattgcggtaggcgtatcccgtgtcgtcgccgcgatg
caagacccgaacccccaggtcgccgggcgcggcttatatcgtctcaagcaagaaggcatt
gaagtcagccacggcctgatgatgaatgaagcggaagccctgaataaaggctttctgaag
cggatgcgtacggggtttccgtttgtccagcttaaacttggtgcgtcgctggatggccgc
acggcgatggcgagcggtgaaagccagtggatcacctccgccgaatcacgtcgcgatgtg
caacgcttccgggcgcaaagtagcgcgattctcaccagcagcgccacggtactggctgac
gatccgtccctgacggtgcgctggaacgagctggatgccgccacccaggcgctgtatccg
caagaccaggtgcggatgccgacgcgaattgtgattgattcacaaaaccgcgtaacgccc
gatcataagattattcatcagccaggcgaaacctggctggcgcgcactcagcccgatgac
acccagtggccggaaggagtgacgcaactgcctgtgccggcgcataacggccatcttgat
ttagtggtcctgatgatgctgctgggcaaacgccagattaattcgatttgggtcgaggcg
ggcgcagaactgtccggcgcgctgttgcaggcgggcgtggtggacgagattgtgctctat
atcgcgccgaagctgcttggtaacgatgcgcgcgggctatttaccctgcctggccttgaa
aagctggtggatgcgccctcacttagattcagcgagatacgaccggttggcccggatttg
tgcctgcgtcttacgttacaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (28)   

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