KEGG   Atlantibacter hermannii: NCTC12129_01249
Entry
NCTC12129_01249   CDS       T05790                                 
Symbol
hupB
Name
(GenBank) DNA-binding protein HU
  KO
K03530  DNA-binding protein HU-beta
Organism
ahn  Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:ahn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ahn03032]
    NCTC12129_01249 (hupB)
   03036 Chromosome and associated proteins [BR:ahn03036]
    NCTC12129_01249 (hupB)
   03400 DNA repair and recombination proteins [BR:ahn03400]
    NCTC12129_01249 (hupB)
DNA replication proteins [BR:ahn03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    NCTC12129_01249 (hupB)
Chromosome and associated proteins [BR:ahn03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    NCTC12129_01249 (hupB)
DNA repair and recombination proteins [BR:ahn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      NCTC12129_01249 (hupB)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2
Other DBs
NCBI-ProteinID: VDZ72164
UniProt: A0A447LKL9
Position
1:1164771..1165043
AA seq 90 aa
MNKSQLIDKIAAGADISKAAAGRALDALIGSVTDSLKSGDEVALVGFGTFSVRERAARTG
RNPQTGKEITIAAAKVPGFRAGKALKDAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
gtgaataaatctcaactgatagacaaaattgccgctggtgctgatatttctaaagccgcg
gctggacgtgcgttagatgctttgattggctctgttactgattctctgaaatccggagat
gaagtggctttagttggttttggtactttctctgttcgtgagcgtgcagcccgtactggc
cgcaacccgcaaaccggcaaagaaatcaccattgcagctgcaaaagtaccgggattccgt
gcaggcaaggcactgaaagacgcggtaaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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