KEGG T05790: NCTC12129

Atlantibacter hermannii: NCTC12129_01800

Entry

NCTC12129_01800   CDS       T05790

Symbol

rumB

Name

(GenBank) 23S rRNA (uracil-5-)-methyltransferase

K03212

23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]

Organism

ahn Atlantibacter hermannii

Brite

KEGG Orthology (KO) [BR:ahn00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ahn03009]
    NCTC12129_01800 (rumB)
Enzymes [BR:ahn01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.189  23S rRNA (uracil747-C5)-methyltransferase
     NCTC12129_01800 (rumB)
Ribosome biogenesis [BR:ahn03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    NCTC12129_01800 (rumB)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_31 MTS Methyltransf_25 Methyltransf_15 Cons_hypoth95 Methyltransf_12 Methyltransf_11 Methyltransf_32 Met_10

Other DBs

NCBI-ProteinID:

VDZ72700

UniProt:

A0A447LLU4

Position

1:1670448..1671575

AA seq 375 aa
MQCALYDAGRCRSCAWIEKSLPQQCQAKMNDLRQLLGELPVEQWCEPVSGAESAFRNKAK
MVVSGSVEKPLLGMLHRDGSTEDLTDCPLYSDAFRRVFTVLKPFIARAGLTPYNVARKRG
ELKYLLITESTLDGGMMLRFVLRSETKLAQLEAALPWLLAQLPQLKVVSANIQPVHMAIM
EGEREIVFTAERALEENFNGVPLWIRPQSFFQTNPQVASQLYATARDWVRALPVKHMWDL
FCGVGGFGLHCATPAMRLTGIEIAPEAIASARQSAEMLGLTDVHFQALDSTRFATAQQDI
PDLVVVNPPRRGIGEELCEFLSAMAPKTILYSSCNAQTMAKDIRLLEGYRIEKIQLFDMF
PHTAHYEVLTLLQRG

NT seq 1128 nt +upstreamnt +downstreamnt
atgcagtgcgctctctatgatgccggtcgttgtcgctcctgcgcgtggattgaaaaatcc
ttgccgcaacagtgccaggccaaaatgaacgatcttcgccagttgcttggcgagcttcct
gtcgaacagtggtgcgaacccgtatccggcgcggaaagcgcgtttcgcaataaagcaaag
atggtcgtgagcggcagcgtggagaaaccgttgctgggcatgctgcatcgcgatggcagc
accgaggatctgaccgactgcccgctctattctgacgcgtttcgccgggtgtttaccgtt
ctgaaaccgtttatcgcccgcgccgggctaacgccttataacgtggcgcgtaaacgcggc
gaattgaaatatcttcttatcaccgaaagcaccctcgacggcggcatgatgctgcgtttt
gtgctgcgttctgaaaccaaactggcgcagttagaggcggcgctgccgtggttgctggcg
cagttgccgcagttaaaggtggtatcggccaatatacagccggtgcatatggcgattatg
gaaggggagcgggagattgttttcactgctgagcgtgcgctggaggagaattttaacggc
gtaccgctgtggatccgtccgcaaagttttttccagaccaacccgcaggtagcgagccag
ctctatgccactgcccgcgactgggtgcgggcgctgccggtaaaacatatgtgggattta
ttctgcggcgtgggtggatttggtctgcactgcgccacgcccgccatgcgtttgaccggc
attgagattgcgccggaggcgattgcgagcgcccgccagtccgctgaaatgttgggcctg
accgacgtgcattttcaggcgctggattccacccgtttcgctactgcccagcaggacatc
ccggatttagtggtggtaaaccccccgcgccgcggcattggcgaggaactgtgtgagttt
ctgtcggctatggcaccgaaaacgattttgtattcaagctgtaatgcgcaaaccatggcg
aaagatattcgcctgcttgagggataccggatcgagaaaatccagcttttcgacatgttt
ccccataccgcgcattatgaggtgttgacgctgttgcagcgggggtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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