KEGG   Atlantibacter hermannii: NCTC12129_04446
Entry
NCTC12129_04446   CDS       T05790                                 
Symbol
hfq
Name
(GenBank) host factor-I protein (HF-I)
  KO
K03666  host factor-I protein
Organism
ahn  Atlantibacter hermannii
Pathway
ahn02024  Quorum sensing
ahn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ahn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCTC12129_04446 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NCTC12129_04446 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ahn03019]
    NCTC12129_04446 (hfq)
   03036 Chromosome and associated proteins [BR:ahn03036]
    NCTC12129_04446 (hfq)
Messenger RNA biogenesis [BR:ahn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     NCTC12129_04446 (hfq)
Chromosome and associated proteins [BR:ahn03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    NCTC12129_04446 (hfq)
SSDB
Motif
Pfam: Hfq LSM Herpes_capsid
Other DBs
NCBI-ProteinID: VDZ75247
UniProt: A0A447LU48
Position
1:complement(4026070..4026375)
AA seq 101 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGSSSNYHHSNAQGASAPQQDSDDTE
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcttgaacgcactgcgtcgtgaacgtgtt
ccagtttcaatttacctggtgaatggtattaagctgcaagggcagattgaatcttttgat
cagttcgtcattttgttgaaaaacacggttagccagatggtttataagcacgcgatttct
accgttgtgccgtctcgcccggtttctcatcacagcaataacgcaggtggtagttcaagc
aactatcatcacagtaatgcgcagggtgcatccgcaccacagcaagacagcgacgatacc
gaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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