KEGG   Aeromonas hydrophila subsp. hydrophila AL09-71: V428_00580
Entry
V428_00580        CDS       T03192                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ahr  Aeromonas hydrophila subsp. hydrophila AL09-71
Pathway
ahr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ahr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    V428_00580 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ahr03021]
    V428_00580 (rho)
   03019 Messenger RNA biogenesis [BR:ahr03019]
    V428_00580 (rho)
Transcription machinery [BR:ahr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     V428_00580 (rho)
Messenger RNA biogenesis [BR:ahr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     V428_00580 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_22 OB_RNB AAA_25 AAA Mor FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: AHX30631
Position
130956..132221
AA seq 421 aa
MNLTELKNTPVSELVQLGESMGLENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTD
GFGFLRSADGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDRPENSRNKILFENLTPLHANERLRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVYPAIDI
TRSGTRKEELLTTGDELQKMWILRKIVHPMGEIDGIEFLIDKLAMTKTNDEFFDAMRRQQ
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatctgactgaattaaagaacactcctgtgtccgagctggtacagcttggcgaatcc
atggggttggaaaatctggctcgggcgcacaagaaagacattattttcgcgatcctcaag
gcgcacgccaagggtggcgaggatatctttggcgacggtgtgctggaaatcctgaccgat
ggtttcggcttcctgcgtagtgcagacggctcctacctggccggcccggacgacatctat
gtctccccgagccagatccgccgtttcaacctgcgtaccggcgataccatctccggcaag
atccggccgccgaaagagggcgagcgctacttcgctctgctcaaggtcaacgaggtcaac
tacgaccgtccggaaaactcccgcaacaagatcctgtttgaaaacctcactccgctgcac
gccaacgagcgtctgcgcatggagcgtggcaacggttccaccgaagacattaccgcccgc
gtactggatctggcttccccgatcggtaaaggccagcgcggcctcatcgtcgcaccgccc
aaggccggtaagaccatgctgctgcagaacatcgcccagagcatcgcctacaaccaccct
gactgcgaactgatcgtcctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgcatggtgaagggtgaagtgatcgcctccaccttcgacgagccggcttcccgtcacgtc
caggtcgccgagatggtgatcgagaaggccaaacgcctggtcgagcacaagaaggacgtg
gtgatcctgctggactccatcacccgtctggcccgtgcctacaacaccgtcatcccgtca
tccggcaaggtactgaccggtggtgtggacgccaacgccctgcaccgtccgaagcgcttc
ttcggtgccgcgcgcaatgtcgaagagggtggcagcctgaccatcatcgccaccgcgctg
atcgataccggctccaagatggatgaagtcatctacgaagagttcaagggtaccggcaac
atggaactgcacctctcgcgcaagattgccgagaagcgtgtctacccggccatcgacatc
actcgctccggcacccgcaaggaagagctgctgaccaccggcgacgagctgcagaagatg
tggatcctgcgcaagattgtgcacccgatgggcgagatcgacggcatcgagttcctgatc
gacaagttggccatgaccaagaccaacgacgagttcttcgacgccatgcggcgccagcag
aagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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