KEGG   Aeromonas hydrophila subsp. hydrophila AL09-71: V428_06735
Entry
V428_06735        CDS       T03192                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ahr  Aeromonas hydrophila subsp. hydrophila AL09-71
Pathway
ahr03030  DNA replication
ahr03410  Base excision repair
ahr03420  Nucleotide excision repair
ahr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ahr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    V428_06735 (ligA)
   03410 Base excision repair
    V428_06735 (ligA)
   03420 Nucleotide excision repair
    V428_06735 (ligA)
   03430 Mismatch repair
    V428_06735 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ahr03032]
    V428_06735 (ligA)
   03400 DNA repair and recombination proteins [BR:ahr03400]
    V428_06735 (ligA)
Enzymes [BR:ahr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     V428_06735 (ligA)
DNA replication proteins [BR:ahr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     V428_06735 (ligA)
DNA repair and recombination proteins [BR:ahr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     V428_06735 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     V428_06735 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     V428_06735 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      V428_06735 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH DZR_2
Other DBs
NCBI-ProteinID: AHX31783
Position
1434072..1436078
AA seq 668 aa
MSDILSRHRQLCELLIEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSV
RVGGQPLTAFKQVRHEIPMLSLDNVFSSEELQVFEQRMRDRLKREVSFTFCCEPKLDGLA
VSLLYVAGQLVQAATRGDGTTGEEITENVRTIKAIPLSLRGEGWPARLEVRGEVFMPKAG
FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLAFYAYGVGVGGEQLGGSHFG
RLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIALQEELG
FVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNA
DEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPADARAILFPTECPVCGSAVERLEGE
AVTRCSGGLFCEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQ
LAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAA
SVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLEALLAAGIQWPAIEKKEASEQPFAGKTF
VLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEE
ELQQALQG
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgagcgatatcctctcccgccaccgtcaactgtgtgagctgctgatcgagtacggtcat
cagtactatgtgctggacaaccccacggtgccggacgccgaatacgatcgcctgatgcgc
gagctgatcgcgctggaagccgagcaccccgagctgaagacgccggcctcgccgagcgtg
cgggtgggtggccagccgctgaccgccttcaaacaggtgcgccacgagatccccatgctg
agtctggacaacgtgttcagcagcgaggagctgcaggtcttcgagcagcggatgcgcgat
cgcctcaagcgggaggtgagctttaccttctgctgcgagcccaagctggacgggctggcg
gtgagcctgctctatgtggctggccagctggtgcaggccgccactcggggcgatggcacc
acgggcgaggagatcaccgagaacgtgcgcaccatcaaggccattcccttgtccttgcgt
ggcgagggctggccggcccggctggaagtgcgtggcgaggtgttcatgcccaaggctggg
ttcgaggcgatgaacgccaaggcgctggccgccggcgagaaggtgttcgtcaacccgcgc
aatgccgctgccggcagcctgcgtcagctcgattcacgcatcaccgccagccgcccgctg
gccttctacgcctatggcgtgggggtgggcggcgagcagctcggtggctctcacttcggt
cgcctcaatcagctcaaagagtgggggctgccgctcagccctgaagtgaagctcaaggag
ggggctgccggttgccaggcgttccacgacgacatcctggcgcgccgtggcgagctcccc
tacgagattgacggcgtggtctacaaggtggatgccatcgccctgcaggaggagctcggt
tttgtggcgcgggcaccgcgctgggccaccgcccacaagttcccggcccaggaagagatg
actttgcttgagaacgtcgagttccaggtcggccgtaccggcgccgtgaccccggtggcc
aagctcaaacctgtgtttgtcggcggcgtcaccgtctccaacgccaccctgcacaatgcc
gacgagattgagcgccttggcgtgatgatcggcgacaccgtgatcgtgcgccgggccggg
gacgtgatcccgcagatcgtggcggtggtggaggcgcagcgcccggcggatgctcgcgcg
attctcttcccgaccgagtgcccggtgtgcggttcggcggtggagcggctggagggagag
gcggtgacccgctgctccggcggcctgttctgcgaggcgcagcgcaaggaggcgatcaag
cacttcgccgcgcgtcgtgccatggacgtggacggcctcggcgacaagatagtggagcaa
ctggtggacaaggggctggtgaagaccccggccgatctgttcagcctcaatgccattcag
ctggccgggctcgagcggatggggcaaaagtcggccctcaatctggtggcggccatcgat
gcagcccgcagcaccacgctgccccgcttcctgtttgcgctggggatccgcgaagtgggg
gaggcgaccgccttgaacctcgccaaccacttcctgactctggacgccctgcgcgccgcc
tcggtggagcagttgctggaagtggccgacgtgggggacatagtggccaagcatgtctac
tacttcctgcgccagcctcacaacatcgaggtgctggaggccctgctggccgccggcatc
cagtggccggccatcgagaagaaagaggcaagcgagcagccttttgccggcaagaccttc
gtgctgaccggcaccctcaccaccttgtcgcgcaacgacgccaaggcggcgctgcaggcg
ctgggggccaaggtggcgggctcggtgtcggccaagaccgatgtgctggtggcgggggag
gcggcaggctccaagctggtcaaggcccaggagctcggcatcaccgtctggagtgaagaa
gagctgcaacaggcgttgcagggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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