KEGG   Actinomyces howellii: NCTC11636_02589
Entry
NCTC11636_02589   CDS       T06068                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ahw  Actinomyces howellii
Pathway
ahw03030  DNA replication
ahw03410  Base excision repair
ahw03420  Nucleotide excision repair
ahw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ahw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NCTC11636_02589 (ligA)
   03410 Base excision repair
    NCTC11636_02589 (ligA)
   03420 Nucleotide excision repair
    NCTC11636_02589 (ligA)
   03430 Mismatch repair
    NCTC11636_02589 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ahw03032]
    NCTC11636_02589 (ligA)
   03400 DNA repair and recombination proteins [BR:ahw03400]
    NCTC11636_02589 (ligA)
Enzymes [BR:ahw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NCTC11636_02589 (ligA)
DNA replication proteins [BR:ahw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NCTC11636_02589 (ligA)
DNA repair and recombination proteins [BR:ahw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NCTC11636_02589 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NCTC11636_02589 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     NCTC11636_02589 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NCTC11636_02589 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 HHH UPF0758_N Invasin_D3 HHH_8 PTCB-BRCT
Other DBs
NCBI-ProteinID: VEG30113
UniProt: A0A3S4TBI7
Position
1:3077473..3079911
AA seq 812 aa
MTHTPTAETPAEPSALPAPAGLSAVPAPARARWAELVRLIERARDAYYDALEAQSPYSDA
EYDALFRELEDLEASHPALALDTSPTRSVGGRATTDFAPAAHHERMYSLQDVFSLEEVED
WARRMVARTSTADEELAMTAEVKVDGLAVALTYTDGVLTRAATRGDGTVGEDVTGNVRTI
ANVPLVLAGSSHPALLEVRGEVYFPVAEFTAFNEARRTANLERERDGLAPLQVFANPRNA
AAGSLRQKNPAVTAARPLALVAHGIGAFTPAPGEGLPDAQHEWYELLRGWGLPVSPYTEV
VRGRAQREAYIARYAEHRHDLLHEIDGIVFKIDSRALQAEMGHTSRVPRWAAAYKYPPEE
VRTRLLDIDVQVGRTGRVTPFGIMEPVLVAGSRVSRATLHNATEVARKGVRVGDLVVLRK
AGDVIPEIVGPVLEVRDGTEKGFVMPSRCPSCGHDLAPAKEGDVDLRCPNTRSCPAQVTE
RIAHIGSRGALDVEGLGDEAAAALTQPDAGREEALAALAAGRSLETERSRLRIPAAELAE
LAPADRLDAARRLVADNGVKVQAPVLTGEAALFDLTVEDLRDVCVYQPVRRRGEPTGDWR
LVRFFWSKQTYDAEGAVRKATAPGKSATGVLAHLEEAKDRPLWRVLVALSVRHVGPTAAR
ALAARFGSLEALRAAGLDELSEVEGVGPTIAAAWRQWLDEDWHVEILDRWAAAGVRTADE
LTGPARPARTLEGLTVVVTGSLEGFTRDGAKEAIVARGGRAAGSVSARTSYVVVGANAGS
KETKARDLGLTILDEEGFERLLAAGPQGLTEQ
NT seq 2439 nt   +upstreamnt  +downstreamnt
atgacccacaccccgacggcggagacacccgccgagccgagcgccctgcccgccccggcc
ggtctgagcgccgtgcccgccccggcccgtgcccgctgggccgagctcgtccgcctcatc
gagcgcgcccgggacgcctactacgacgccctggaggcccagagcccctactccgacgcc
gagtacgacgccctgttccgcgagctcgaggacctcgaggcctcccaccccgcgctggcc
ctcgacacctcgcccacccgcagcgtcggcggcagggccaccaccgacttcgccccggcc
gcccaccacgagcgcatgtactccctccaggacgtcttcagcctcgaggaggtcgaggac
tgggcccggcgcatggtcgcccgcacctcgaccgccgacgaggagctggcgatgaccgcc
gaggtcaaggtcgacggcctggcggtcgccctcacctacaccgacggggtgctcacccgc
gccgccacccggggcgacggcaccgtcggggaggacgtgaccggcaacgtccgcaccatc
gccaacgtcccgctggtcctggcagggtccagccaccccgccctgctcgaggtgcgcggc
gaggtctacttccccgtggccgagttcaccgccttcaacgaggccaggcgcaccgccaac
ctcgagagggagcgcgacgggctcgcgcccctccaggtcttcgccaacccgcgcaacgcc
gcggcagggtccttgcggcagaagaaccccgccgtcaccgcggcccgccccctggcgctc
gtcgcccacgggatcggggccttcaccccggcgccgggggaggggctgcccgacgcccag
cacgagtggtacgagctgctccggggatgggggctgccggtgtccccctacaccgaggtc
gtgcggggccgagcccagcgcgaggcctacatcgcccgctacgccgagcaccgtcacgac
ctcctccacgagatcgacgggatcgtcttcaagatcgactcccgcgccctccaggccgag
atgggccacacctcccgggtgccccggtgggcggcggcctacaagtacccgcccgaggag
gtccgcacccgactgctcgacatcgacgtccaggtggggcgcacaggccgggtcaccccc
ttcggcatcatggaaccggtcctcgtggccggctcgcgggtctcccgcgccacgctgcac
aacgccaccgaggtggcccgcaagggcgtgcgcgtcggggacctcgtcgtcctgcgcaag
gcaggagacgtcatccccgagatcgtcgggccggtgctcgaggtccgcgacggcaccgag
aagggcttcgtcatgcccagccgctgcccctcctgcggccacgacctcgcccccgccaag
gagggcgacgtcgacctgcgctgccccaacacgcgctcctgccccgcgcaggtcaccgag
aggatcgcccacatcggctcgcgcggagccctcgacgtcgagggactgggcgacgaggcg
gcggcggccctcacccagcccgacgcaggccgcgaggaggcgctcgcggccctggcggcc
gggcggagcctggagaccgagcgcagccgcctgcggatccccgccgccgagctggccgag
ctggctcccgccgaccgactcgacgccgcccggcgcctggtcgccgacaacggcgtcaag
gtccaggccccggtgctcaccggtgaggccgcgctcttcgacctcaccgtggaggacctg
cgcgacgtctgcgtctaccagccggtcaggcgcagaggcgagccgaccggcgactggcga
ctcgtccgcttcttctggtccaagcagacctacgacgccgaaggcgcggtcaggaaggcg
accgctccgggcaagagcgccaccggcgtgctcgcccacctcgaggaggccaaggaccgg
ccgctgtggcgggtgctcgtggccctgtcggtgcgtcacgtcggtccgaccgccgcccgg
gccctggccgcgcgcttcggctccctcgaggcgctgcgcgccgccgggctcgacgagctg
agcgaggtcgagggcgtcggcccgacgatcgccgcggcgtggaggcagtggctcgacgag
gactggcacgtcgagatcctcgatcgctgggcggcggccggggtgcgcaccgccgacgag
ctgaccgggccggcccgtcccgcccggaccctcgaggggctgaccgtcgtcgtgacggga
tcgctcgagggcttcacccgtgacggcgccaaggaggcgatcgtcgcacgcggcgggcgg
gcggccgggtcggtgtccgcccgcacgagctacgtcgtcgtgggagccaacgccgggtcc
aaggagaccaaggcccgcgacctcggcctgacgatcctcgacgaggagggcttcgaacgg
ctcctggccgccgggccccagggcctgaccgagcagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system