KEGG   Acinetobacter indicus: CTZ23_13880
Entry
CTZ23_13880       CDS       T05342                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
aid  Acinetobacter indicus
Pathway
aid03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aid00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CTZ23_13880 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aid03021]
    CTZ23_13880 (rpoB)
   03400 DNA repair and recombination proteins [BR:aid03400]
    CTZ23_13880 (rpoB)
Enzymes [BR:aid01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CTZ23_13880 (rpoB)
Transcription machinery [BR:aid03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CTZ23_13880 (rpoB)
DNA repair and recombination proteins [BR:aid03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CTZ23_13880 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 DOCK-C2
Other DBs
NCBI-ProteinID: AVH15260
Position
complement(2861088..2865176)
AA seq 1362 aa
MAYSYTEKKRIRKNFGKLPQVMEAPYLLAIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV
FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLILKDRETKSIKDVR
EQEVYMGEMPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
YRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALNYNNEQILDLFYEKVPVYLDMGSYQ
IDLIPERLRGEMAQFDITDADGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT
AEDIVLKDGDVIPANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFIADTLRADTTTGR
EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
KSREVEGILSNEDITDVLKTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANSFGFLETPY
RKVVDGRVTDEVEYLSAIEEVGTVIAQADSVVDQDGNLTEEFVSVRHHGEFVRMSPEKVT
HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLIADKPLVGTGMEANVARD
SGVCVVAGRGGVIEFVDASRIVIRVNDDEMIAGEAGVDIYNLIKYTRSNQNTCINQNVVV
RLGDKVARGDILADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDERAQAIEKA
QLDAYRKDLKEEYKIFEEAARERIIRLLKGQESNGGGTTKRGDKLSEDVLSGLELVDLLD
IQPVDEAIAERLTQIQVFLKEKSLEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRR
IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGM
AAKGLGDQIDKMLKEQRTILELREFLDKIYNKVGGEQEDLNSLTDDEILALSGNLRAGVP
LATPVFDGAEEGQIKDLLELAGLSRTGQTVLYDGRTGERFDRPVTVGYMYMLKLNHLVDD
KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
NT seq 4089 nt   +upstreamnt  +downstreamnt
atggcatactcatataccgaaaagaaacggatccgtaagaattttggtaaattgccccaa
gtcatggaagcaccgtacctgttggcgattcaagtcgactcgtaccgtactttcttgcaa
gatggcaaatctccaaaaaaccgcgaagatatcggtctccaagccgcatttcgttcagtt
tttcctatagaaagttattctggcaatgctgctttagaatttgttgagtatagtcttggt
aaaccagagtttgatgtacgtgaatgtatccttcgcggctcaacttatgcggcaccaatg
cgcgttaaaattcgtttgatcctgaaagatcgtgaaacgaaatcaatcaaagacgtacgt
gaacaagaagtctatatgggcgaaatgccattgatgacggataacggtacttttgtgatc
aacggtaccgagcgtgtaattgtatcgcaattacaccgttcaccaggcgtattctttgac
catgacaaaggtaagactcactcaagcggtaaagtgctgtattcagcgcgtattattcct
taccgtggttcatggttagactttgaatttgatgccaaagatttagtctatgtacgtatc
gaccgtcgtcgtaaattactagcgactgtggttctgcgtgccctgaactataacaacgaa
cagattcttgacctgttctacgaaaaagttcctgtttacctggatatgggtagctatcag
atcgacttgattccagaacgtctgcgtggcgaaatggcgcaattcgatatcactgatgcc
gatggtaaagtcattgttgaacaaggtaagcgtatcaacgcacgtcatgttcgtcaaatg
gaagcctctggtctgaccaaactgtcagtaccggatgaatacctgtacgagcgtattact
gctgaagacatcgtgctgaaagatggcgatgtgattccagccaacaccctgttaagccat
gaagtgatggtgaaactggctgaaggcggcgtgaagcagttcaacatcctgttcaccaac
gacatcgaccgcggttcattcattgcagatacactacgtgccgatacgactacaggtcgt
gaagaagcactggttgaaatctacaaagtgatgcgtccaggcgagccaccaaccaaagaa
gcagctgagaacctgtttaacaacctgttcttctcttctgagcgttatgacctgtcacca
gtcggccgtatgaagttcaaccgtcgtctgggtcgtccttatgaggtcggtactgaccag
aagtcgcgcgaagttgaaggcatcctgtcgaacgaagacatcacggatgtactgaaaaca
ttggttgaaatccgtaacggtaaaggtgaagtcgatgatatcgaccacttgggtaaccgt
cgtgttcgttcagtgggtgaaatgactgagaaccagttccgtgtcggtctggtacgtgtt
gagcgtgctgtcaaagagcgtctatctcaagctgaaactgacaacctgtctccgcaagat
ctgatcaatgcgaagccagtggctgcagccatcaaagaattctttggttcaagccagttg
tctcagttcatggaccagaacaacccgttgtctgaaatcacccacaaacgtcgtgtatcg
gcgcttggtcctggtggtttgacccgtgaacgcgcaggcttcgaagtgcgtgacgtacac
cagactcactatggtcgtgtatgtccaattgaaacgcctgaaggtccaaacattggtttg
atcaactcgctgtctgtatacgcgaaagccaacagcttcggtttcctggaaacaccatac
cgtaaagtggttgatggtcgtgtaaccgacgaagttgaatatctgtctgcgattgaagaa
gtgggtactgtgattgcacaggccgactcggttgtagatcaggacggcaacctgactgaa
gaattcgtttctgtacgtcaccacggtgaattcgtacgtatgtcacctgaaaaagtgact
catatggacgtatctgctcagcaggtggtttctgttgcagcatcgctgattccattcctt
gaacacgatgacgccaaccgtgcattgatgggttccaacatgcaacgtcaggcggtacct
acattaatcgcggacaaaccgctggttggtacgggtatggaagccaacgtggcacgtgac
tccggtgtgtgtgtggttgcaggccgtggtggtgtgatcgagtttgttgatgcatcacgt
atcgtaattcgcgtgaatgatgatgaaatgatagcgggtgaagcaggcgtagatatctac
aacctgatcaaatacacgcgttcaaaccagaacacttgtatcaaccagaacgttgtggta
cgtctgggtgataaagttgcacgtggtgacatcctggcggatggtccatcgacagatggc
ggtgagctggcgctgggtcaaaacatgcgcgtggcgttcatgacctggaatggttacaac
tacgaagactcgatcttgctttctgagcgtgtgcttcaagaagaccgtttaacgtcgatt
cacatccaggaattatcatgtgttgcacgtgataccaaactgggtgctgaagaaatcacg
gctgatattccaaacgtcggtgaagctgcactttctaaactggatgagtctggtatcgtt
tatatcggtgctgaagtgactgctggtgatatcctggtgggtaaagtaacacctaaaggt
gaaactcagttaacacctgaagaaaaactgcttcgcgcaatttttggtgaaaaagcagct
gacgtaaaagactcttctttacgtgttccatcgggcactaaaggtacagtgattgacgtt
caagtgtttacacgtgatggtcttgaaaaagacgaacgtgctcaagcaattgaaaaagct
cagcttgatgcttaccgtaaagacttgaaagaagaatataaaatcttcgaagaagcagca
cgtgaacgtattattcgtctgttgaaaggtcaggaatctaacggtggtggcacaactaaa
cgcggtgacaaactgtctgaagacgttctgtctggtttagagcttgttgatctgttagac
atccaaccagtagatgaagcaattgctgagcgtttaactcaaattcaagttttcttgaaa
gagaagagccttgaaattgatgaaaagtttgctgagaagaaacgcaaattatctacaggc
gatgaactgaccactggcgtactgaaagttgttaaggtttatctagcggttaaacgtcgt
atccagccgggtgataagatggcgggtcgtcacggtaacaagggtgttgtatccaacatt
ctgccagttgaagacatgccacacgatgccaacggtgtaccagtagacgtggtactgaac
ccgcttggtgtaccatcgcgtatgaacgtgggtcagattctggaaacgcacttaggtatg
gcagccaaaggtctgggtgatcagatcgacaagatgctgaaagaacagcgcaccattctt
gaactgcgtgaattcttggacaagatttacaacaaggtgggcggcgaacaagaagatctt
aatagcctgacggatgatgaaatcttggcactttctggtaacctgcgtgccggtgttccg
ttggcaacacctgtatttgatggtgctgaagaaggtcagatcaaagacttgcttgaactt
gcgggtctgtcacgtaccggtcaaaccgtattgtatgatggccgtacgggtgagcgtttc
gaccgtcctgtcactgttggttacatgtacatgctgaaactgaaccacttggttgatgac
aagatgcatgcgcgttcaactggttcttactcactcgtaacacagcagccgctgggtggt
aaggcacaattcggtggtcagcgtttcggtgagatggaagtctgggcactggaagcatac
ggtgcagcttatacgcttcaagaaatgctcactgtgaagtcggatgacgttgaaggccgt
acccgcatctataagaatattgtagatggcaaccattatatggatccgggcatgcctgaa
tcgttcaacgtattgaccaaagagatccgttctttaggtatcaacattgaactgaaaaat
ggtgactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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