KEGG   Histoplasma mississippiense: HCAG_06417
Entry
HCAG_06417        CDS       T02229                                 
Name
(RefSeq) DNA-directed RNA polymerase II 13.3 kDa polypeptide
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
aje  Histoplasma mississippiense
Pathway
aje03020  RNA polymerase
aje03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aje00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HCAG_06417
  09124 Replication and repair
   03420 Nucleotide excision repair
    HCAG_06417
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aje03021]
    HCAG_06417
   03400 DNA repair and recombination proteins [BR:aje03400]
    HCAG_06417
Transcription machinery [BR:aje03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     HCAG_06417
DNA repair and recombination proteins [BR:aje03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      HCAG_06417
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L CorA
Other DBs
NCBI-GeneID: 5445395
NCBI-ProteinID: XP_001538812
AA seq 168 aa
MENQQPTKPLDPERERSMTFFDSSAASYRQNPCKTKVRPHLDMVARFESFVLLPGEKKVE
VEVDTRIPSTAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPHPLVPKFILRVQTDGQ
ITPKEAVITACHELVKDLGSLSREFTKEYELRKMVGTGAQQQNAQNGV
NT seq 507 nt   +upstreamnt  +downstreamnt
atggaaaaccaacaacccactaagccgcttgatcccgaacgggagcgctccatgaccttc
ttcgactcctctgcggcgagctaccgccagaacccttgcaagaccaaagttcgtccgcac
ctggacatggtagctagattcgaatccttcgttcttctcccaggcgagaagaaggtcgag
gttgaggttgatacccgcatcccgtccaccgccattttcaccttcaacaaggaggaccac
acgcttggcaatatgatccgctcgcgtcttattaccagctcacacgtccttttctcgggc
tacaaggtccctcaccctctggtcccaaaattcattctacgggtacaaacagacggtcaa
atcacccccaaggaagccgttatcaccgcatgccacgaactagtgaaggatttgggctcc
ctcagccgcgagtttacgaaggaatacgaattgcggaagatggttgggacgggtgctcag
caacagaacgcgcagaacggtgtttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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