KEGG   Amphritea japonica: AMJAP_3206
Entry
AMJAP_3206        CDS       T06992                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ajp  Amphritea japonica
Pathway
ajp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ajp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AMJAP_3206 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ajp03021]
    AMJAP_3206 (rpoB)
   03400 DNA repair and recombination proteins [BR:ajp03400]
    AMJAP_3206 (rpoB)
Enzymes [BR:ajp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AMJAP_3206 (rpoB)
Transcription machinery [BR:ajp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AMJAP_3206 (rpoB)
DNA repair and recombination proteins [BR:ajp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AMJAP_3206 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 DOCK-C2
Other DBs
NCBI-ProteinID: BBB27791
UniProt: A0A7R6PGF2
Position
complement(3638903..3643003)
AA seq 1366 aa
MAYSYTEKKRIRKDFGKLPEAMDVPYLLAIQLDSYLKFLQQDADSAERKDVGLHAAFSSV
FPIVSYSGNAALEYVGYRLGEPVFDVKECQMRGITYAAPLRVKVRLVIYDRDSSNKAIKD
IKEQEVYMGEMPLMTDNGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDSLFVRIDRRRKLPATILLRALGYTTEEILDTFFDNTEWSLTADK
VLMTLVPSRLRGETATFDIKDGSGNIVVESGRRITPRHIRQLEKEKLQQLDVPSEYLIGN
VIAKDIIDPATGEVLCEGNSEITEELLEQMRGAGVAGLETLYTNELDCGPFISDTLRIDT
TRSQLEALVEIYRMMRPGEPPTKESAENLFENLFFSEERYDLSAVGRMKFNRRLTRADET
GSGILDKDDILAVMKTLIDIRNGKGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESDNLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNDYGFLESPYRKVV
DGKVTDEVEYLSAIEEGRHVIAQASAGMDDSNNLTDELVAVRHQNEFTVMPPEKVTYMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERYVARDSGVC
VTAERGGVIESVDAARIVVRVSDEETLAGEAGVDIYNLTKYTRSNQNTCINQRSIVRQGE
TVQRGDIMADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCVARDTKLGSEEITSDIPNVGESALGKLDEAGIVHIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKTGTIGKVIDVQVFTRDGVPKDERAVSIEESELKR
IRKDLNEELRIVDQATFERLERALCGLKAEGGANFKKGEEITSEALAELKKSDWFKIRVA
DEATQEMLEKAQEQLEERRVELDAKFEDKKNKLQTGDDLAPGVLKIVKVYVATKRRVQPG
DKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQVLETHMGMAAKG
LGVKINAMLQAERDRLETVKELREFLDRIYNSELGGYKSGRHEDISSFSDDEVLELAKNL
KGGVPLATAVFDGAKEVEVKELLRMADLSDTGQFTLFDGRSGDQFSRPVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESD
NT seq 4101 nt   +upstreamnt  +downstreamnt
atggcttactcatatactgaaaagaaacgcatccgtaaagacttcggaaagctgccggaa
gcgatggatgtgccatatctgttggcaatccagttggattcttatttgaaattcctgcaa
caggatgctgactctgcagagcgcaaagatgtcggactgcatgcggctttcagttccgta
tttccgattgtttcctattccggaaacgctgcattggaatatgtaggttaccgtctgggc
gagcctgtttttgacgttaaagaatgccagatgcgcggcattacatatgctgctccacta
cgcgtaaaagtacgcctagtaatctacgatcgtgattcatcgaataaagcgatcaaagat
attaaagaacaagaagtatacatgggcgaaatgccgctgatgaccgacaacggtacattc
gttgttaacggtactgagcgagtaatcgtatctcagctgcatcgttcgccaggtgtattc
ttcgaccatgacaagggcaaaactcactcttctggtaagttgttgtattctgctcgtgtt
attccttaccgtggttcttggttggacttcgagtttgatcctaaagatagcctgtttgtt
cgtatcgaccgtcgtcgtaaactgccggcaactattctgctgcgcgcgctgggctatacc
actgaagagatcctcgataccttctttgataatacagagtggtctctgactgccgataaa
gtgttgatgacactggtgccatcacgtttgcgtggtgagactgcaacatttgatatcaaa
gatggcagcggtaacattgttgttgaatctgggcgccgtattacgccgcgccatattcgt
cagctagagaaagaaaaattacagcagctggatgtcccatctgaatacctgatcggtaat
gtcatcgcgaaagatattattgatcctgcgactggcgaagtgctgtgtgaaggcaacagt
gagatcactgaagagttgctggaacagatgcgcggtgctggtgttgctggccttgaaacg
ctttacaccaatgagttggattgtggtccgtttatctctgatactctgcgtatcgatact
acccgcagccaactggaagcgctggtagagatctaccgtatgatgcgtcctggtgagcca
ccaaccaaagaatctgctgagaacctgttcgaaaacctgttcttcagtgaagagcgttat
gacctgtcagcggttggtcggatgaagttcaaccgtcgtttgacccgcgctgatgaaacc
ggctcaggtattctcgataaagacgatattctggcggtgatgaaaaccctgatcgacatt
cgtaacggtaaaggcgttgtggatgatattgatcacctgggtaaccgtcgtatccgttct
gttggtgagatggcagagaatcagttccgtgtcggactggtgcgtgttgagcgtgctgtt
cgtgagcgtctgagcatggctgaatctgataacctgatgcctcaggatctgattaatgct
aagccggtcgctgctgcagttaaggagttcttcggatcttctcagctgtctcagtttatg
gatcagaacaacccgttgtcagaagttacccacaagcgccgtgtatcagcgttagggcct
ggcggtctgacccgtgaacgagctggttttgaggttcgtgacgtacacccgacccactat
ggtcgtgtatgcccaatcgagacacctgaaggaccaaacatcggtctgatcaactcgctg
gcgacttatgcccgcactaacgattacggcttcctggaaagtccgtaccggaaagtggtt
gatggtaaagtaacggatgaagttgaatacttgtctgcgattgaagaaggtcgacatgtt
atcgcccaggcatctgccggaatggacgatagcaacaatctgaccgatgaattggttgcc
gttcgtcaccaaaatgaatttaccgtaatgcctccggaaaaagtaacctacatggatgta
tctccacgtcaggttgtatccgtagcagcggcattgattccattcctggagcacgatgat
gctaaccgggcattgatgggatcgaacatgcagcgtcaggctgtaccaacactgcgtgct
gataagccgttagtaggtactggcatggagcgttatgtagcccgtgattccggtgtatgt
gtgacggctgagcgtggcggtgttatcgagtctgttgatgcggcgcgtatcgtcgtccgc
gtgagcgacgaagaaacactggcgggtgaagcaggtgtagatatctacaacctgactaag
tacacccgttcaaaccagaatacctgtatcaaccagcgttctatcgtccgtcagggcgag
actgtgcagcgcggtgatatcatggctgacggtccttccgttgacttgggtgagctggct
ctggggcagaatatgcgtatcgcatttatgccttggaatggttacaactttgaggattcc
atcctgatctctgagcgtgttgttcaggaagatcgttttaccactatccacattcaggag
cttacctgtgtggcgcgtgatactaagctgggttcagaagagattacatccgatattcca
aatgttggtgagtctgcactgggtaagctggatgaagccggtattgtacacatcggtgct
gaagtaggcccgggcgatattctggttggtaaagtgacgcctaaaggtgaaactcaactg
acgccggaagagaagcttctgcgtgcaatcttcggtgagaaagcctccgacgtgaaggat
acttcactgcgcgtaaagactggtactatcggtaaggttatcgatgtacaggtatttacc
cgtgacggcgtgcctaaagatgagcgtgctgtatcgattgaagaatctgaactgaaacgc
attcgtaaagatcttaatgaagagttacgcattgttgatcaggcaacctttgagcgtctt
gagcgtgcactttgcggtctgaaagcggaaggtggtgcaaacttcaagaagggtgaggag
atcacctctgaagctctggctgaactgaagaagtctgactggttcaagatccgtgttgct
gatgaagcaactcaggaaatgctggagaaggctcaggagcagctggaagagcgccgcgtt
gagctggatgcgaagtttgaagataagaaaaacaagctgcagacaggtgatgacctggcg
ccaggcgtactgaaaattgtcaaggtttacgttgctactaagcgtcgcgtacagccaggt
gacaagatggcaggacgtcacggtaacaagggtgttatctcggttatcatgcctgttgaa
gatatgccatacgatgagaacggtgagccggtcgatatcgtattgaacccgctgggtgta
ccgtctcgtatgaacgtaggacaggtacttgagacccacatgggtatggcagctaaaggt
ctgggtgtgaagattaatgcgatgctacaagcagagcgtgatcgtctcgagaccgttaaa
gagttacgtgaattccttgaccgtatctacaacagcgagctgggtggatacaagtcgggc
cgtcatgaagatataagcagctttagcgacgacgaagtactggaactggcgaaaaacctg
aaaggcggtgttccgctggcaacggctgtattcgacggtgcgaaagaagttgaagttaaa
gagctgctgcgcatggcagacctcagcgatactggacagttcacactgtttgatggtcgt
agtggagatcagtttagccgtccggtaaccgttggttacatgtacatgctgaaattgaac
cacttggttgatgacaagatgcacgcgcgttctaccggttcttatagcctggttactcag
cagccgctgggtggtaaggcgcagttcggtggtcagcgattcggtgagatggaggtatgg
gcacttgaagcttacggtgctgcctacaccctgcaggagatgctgacggttaagtctgat
gatgtgaatggccgtaccaagatgtataagaacatcgtggatggtgatcacagaatggag
ccgggcatgccagaatcgttcaacgtgttggtgaaagagatccgctcgctgggtatcgac
atcgagctggaatccgactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system