KEGG T05687: AV939

Alteromonas sp. Mac1: AV939_01900

Entry

AV939_01900       CDS       T05687

Name

(GenBank) 2'-5' RNA ligase

K01975

RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]

Organism

ale Alteromonas sp. Mac1

Brite

KEGG Orthology (KO) [BR:ale00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ale03016]
    AV939_01900
Enzymes [BR:ale01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     AV939_01900
Transfer RNA biogenesis [BR:ale03016]
Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    AV939_01900

SSDB

Motif

Pfam:

LigT_PEase 2_5_RNA_ligase2

Other DBs

NCBI-ProteinID:

AMJ85441

Position

complement(468389..469057)

AA seq 222 aa
MRCFIGLDLHSTEKLALDSWRQQALPEVTARNMFTLSEGRAQNEGRGKKGKESKGKRRDA
GASQPYAVNAANYHMTLSFLGHITHRQHEALVAELDTLVHSPFSLTLDTTGIWNGPKILF
AAPESPPAELMALAKSTRKAARAAAIEVDGKGFAPHVTVIRKATVALPVPLYTPHVEMHA
SAFHLFESVSTPQGVTYPIRQSWNLRHNMSVREKLRRGINDE

NT seq 669 nt +upstreamnt +downstreamnt
atgcgttgtttcattggtttagatttacattcaacagaaaagttagccctcgatagttgg
cggcaacaagccctcccagaggtgacagcccgcaacatgttcactctttctgagggccga
gcccaaaatgaaggtagaggaaaaaaaggtaaagagagcaaaggtaaaaggcgtgacgca
ggcgcatcccaaccttatgcggtaaacgcagccaattaccatatgaccttaagttttctt
ggccatattactcaccgtcagcatgaggcgttagtcgctgaactcgatacgctagtacat
tcgccattctccctaacgttagacactaccggtatttggaacggcccaaagattctcttc
gccgcaccagagtcaccgccagcagaacttatggcattagctaaatcgactcgtaaagcc
gcgagagccgcggcaatagaggtagatggcaaagggtttgcgccccatgtcactgttatt
cgaaaagccacggtggcgctacctgtacctttgtatacaccacatgtagagatgcacgcc
tcggcatttcacctgttcgaatctgtctcaaccccccaaggggttacgtaccccattagg
caaagttggaatttaaggcacaatatgtcggtgcgtgaaaagctacgccgaggaattaat
gatgagtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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