KEGG   Actinobacillus lignieresii: NCTC10568_01744
Entry
NCTC10568_01744   CDS       T06678                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
alig  Actinobacillus lignieresii
Pathway
alig03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:alig00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCTC10568_01744 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:alig03019]
    NCTC10568_01744 (rnr)
   03016 Transfer RNA biogenesis [BR:alig03016]
    NCTC10568_01744 (rnr)
Enzymes [BR:alig01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NCTC10568_01744 (rnr)
Messenger RNA biogenesis [BR:alig03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NCTC10568_01744 (rnr)
Transfer RNA biogenesis [BR:alig03016]
 Prokaryotic type
  tRNA degradation factors
   NCTC10568_01744 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 Rho_RNA_bind
Other DBs
NCBI-ProteinID: VEB26980
Position
1:1711183..1713540
AA seq 785 aa
MIIDPNYQQESEKYENPVPSREFILQTIRAFDAPMSREELLEAFHIYDEERIEGVRRRLR
AMENGGQLIFTKGKRYALPEKMDLLKGTVIGHRDGYGFLQVEGGEKSDDWFIPNSQMTRV
MHGDFVLAQPNGTDRRGRREVRIVRVLEVRKKQIVGRFFLESGIGFVVPDDSRISQDILI
PDEHRMGARMGQVVVVELQERKAGFTRPVGFITEILGDNLAPGMEIEIALRNHDIPHVWP
EGVEKQIRQFSEEVPEEAKAGRVDLRDLPLITIDGEDARDFDDAVFARKEGDGWRLWVAI
ADVSYYVRPKTALDLEAANRGNSVYFPNRVIPMLPEILSNGLCSLNPQVDRLCLVAEMTV
SKKGELTGYQFYQAVMNSHARLTYTKVWKILEGDEALRERYATLVPHLETLNEMFKVLQN
TRRHRGAIEFETIENQFIFNPQGRIERIEPLIRNDAHKIIEECMILANIAAARLVEKANE
PALFRIHDKPSEEKLTSFKSFIKECGLTWDVGLDPTPKDYAVLLEQLAERLDRELIQTML
LRSLKQAVYSADNVGHFGLALTEYAHFTSPIRRYPDLLLHRAINYLIEKGKGNTRHYTDC
GGYHYKLDDIDQFGEKCSAAERRADEATREVADWLKCEFMQDHLGEEFEGVISSVTGFGL
FVKINELLIDGLVHISTLDNDYYHYDADRQRLVGGSGVIYRLGDPVKVKVINVNLDDKKI
DFALIDNLRKGIAVGKTAKQKAKKNAGDKPIFKEPKTIKSAKGKSKAKGKAAKTAKKSSG
RQRKK
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgataattgatccgaattaccaacaagaaagcgaaaagtacgaaaatcccgtaccgagt
agagaatttattttacaaaccattcgagcattcgatgcgccgatgagtcgtgaagaatta
ctcgaagctttccatatttatgatgaagaacgtatcgaaggcgttcgccgtcgcttacga
gcgatggaaaacggcgggcaattaatttttaccaaaggtaaacgttatgcgttaccggaa
aaaatggatttgctgaaaggtacggttatcggtcatcgtgacggctacggttttctgcaa
gtggaaggcggcgaaaaaagtgacgattggtttattccgaatagccaaatgacacgcgtg
atgcacggtgacttcgtgcttgcccaaccgaacggcaccgatcgccgaggtcgccgtgaa
gtacgaatcgttcgcgtattggaagtacgtaaaaaacaaattgtcggtcgtttcttcctt
gaaagcggtatcggcttcgtagtaccggacgatagccgtatcagccaagatattttaatt
cccgacgaacaccgtatgggtgcaagaatgggacaagtggttgtggtcgaactgcaagaa
cgtaaagccggttttactcgtccggtcggctttattaccgaaatcttaggcgataatctt
gcaccggggatggaaatcgaaatcgctctacgtaaccacgacattccgcacgtttggccg
gaaggcgtagaaaaacaaattcgccaattcagcgaagaagtgccggaagaagcgaaagct
ggccgtgtagatctgcgtgatttaccgttaataacgattgacggggaagacgcacgagat
tttgacgacgccgtctttgccagaaaagaaggcgacggttggcgtttatgggtagcgatt
gccgatgtgagttattacgttcgtccgaaaaccgcactggatttggaagcggcgaatcgc
ggcaattcggtttacttcccgaatcgagtgatcccgatgttaccggaaattctgtcaaac
ggtttatgttcattaaatccgcaagtggacagattatgtttggtagcggaaatgaccgta
tcgaaaaaaggtgaactgaccggctatcaattctatcaagcggtaatgaactcgcacgcc
cgcttaacttatactaaagtttggaaaatattagaaggtgacgaagcgttacgtgagcgt
tatgcaacactggtaccgcatttggaaactttaaatgagatgtttaaagtgttgcaaaac
actcgtcgccatcgaggtgcgattgaatttgaaacgattgaaaaccaatttattttcaac
ccgcaaggcagaatcgaacgtatcgagccgctaattcgtaacgatgcgcacaaaatcatc
gaagaatgtatgattttagcgaatattgccgccgctcgtcttgtcgaaaaagccaatgaa
ccggcgttattccgtattcacgataaaccgagcgaagaaaagctcactagttttaaatcc
tttattaaagaatgcgggctcacttgggacgttgggcttgatccgacaccaaaggattac
gccgtattactcgaacaactcgccgaacgtctggatcgcgaattgattcaaactatgtta
ctgcgctcgctcaaacaagcggtctattcagcggataacgtcggacatttcggtttggct
ttaaccgaatacgcccactttacttcaccgattcgccgttatcctgatttgctgttacac
cgtgcaattaattacttgattgaaaagggaaaaggcaataccagacactataccgattgc
ggcggttatcactataaattggacgatatcgaccaattcggcgagaaatgttcggcagcc
gaacgtcgggcggacgaagcgacccgtgaagtggcggattggttgaaatgcgaatttatg
caagatcatctcggcgaagagtttgaaggtgtgatttcaagcgtaaccggtttcggttta
ttcgttaaaatcaacgagttattgatcgacggcttggtgcatatttcaacattagacaat
gattactatcattatgatgcggacagacaacgtttagtcggcggcagcggtgtgatttac
cgcttaggtgatccggttaaagtgaaagtaatcaatgtgaatttagacgataagaaaatt
gactttgctttaatcgataatctgcgtaaaggcattgccgtcggtaaaaccgccaaacaa
aaagcaaagaaaaatgccggcgataaaccgatttttaaagagcctaaaacaatcaaatcg
gcaaaaggtaaatctaaagctaagggaaaagcggccaaaacagccaagaaatcgtccggc
cgccaacgtaaaaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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