KEGG   Austrofundulus limnaeus (annual killifish): 106514344
Entry
106514344         CDS       T06063                                 
Symbol
blm
Name
(RefSeq) Bloom syndrome protein isoform X1
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03440  Homologous recombination
alim03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    106514344 (blm)
   03460 Fanconi anemia pathway
    106514344 (blm)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:alim03032]
    106514344 (blm)
   03400 DNA repair and recombination proteins [BR:alim03400]
    106514344 (blm)
Enzymes [BR:alim01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     106514344 (blm)
DNA replication proteins [BR:alim03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    106514344 (blm)
DNA repair and recombination proteins [BR:alim03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     106514344 (blm)
    Bloom's syndrome complex (BTR)
     106514344 (blm)
   FA (Fanconi anemia) pathway
     106514344 (blm)
SSDB
Motif
Pfam: DEAD BLM_N BDHCT Helicase_C RecQ_Zn_bind HRDC RQC DUF1178
Other DBs
NCBI-GeneID: 106514344
NCBI-ProteinID: XP_013859009
UniProt: A0A2I4AU49
Position
Unknown
AA seq 1417 aa
MSGLPQNNLKEQLARHNNAAQSKLSLAKPKTGAFSFKKKSTSGTTKVEYPRKVIGSSVLA
NRNVNITESSLVTKPSLTFSNKLERPQKSQISSFFPVSSNCMSGSFSPAGNSSSLCQTPS
EKTDSKXSPAPNKPESQACCGSRIDSSSLDASGFPIDDWDDLXDFETPVRIKNDSFSSDK
SAKIAKLSSSDEEFPKFTGKQYPDACLEKSELNNGNNAQTCVETDKMEKDVDEKTVSPGL
DVFQDXAEIEVEVSPLRRPRRRCPPPLVTSVLSDSDEDPVDVSKPLEDKTNKNKKMIDPK
XMELNANPETDEDLDYIPPSPISEKTPHTMSEVDKSRDKLGNSQSTDILVPSKSPARAFS
EPTDHQAKDKTKEQLFSLMESICALVDSIPEHELIALSCGDELLLKRAQRKRILASGCDF
LLKMQQPDSTVTSDPNFKXMSSSCGASSFLSSNNSVSADYKKPXQSRRSSVITVDSDCSF
NTDLKPVYNKDSSIFCMENESNCDSPSAYSITKPPFSPFEETSLDVNDVDVSFSPKKTEA
VLQNKSRNPVPAAXAEAEADDFYIDDFDIDDFNDSDIPDYFDEPSVSSVSRQNVSTVSTT
VKEGGPRKSSWEKEPVTPVSAXKPSKIYSPEPNFKNPAHDRFRGFNFPYSQEMMKIFHKR
FGLHQFRFNQLEAINAALLGEDTFVLMPTGGGKSLCYQLPACLSPGVTVVISPLKSLIVD
QIQKLTTLDIPATSLSGDKSDSEAGRIYMQLSRKDPIIKLLYVTPEKVSASNRLISALQN
LFERGLLARFVIDEAHCVSQWGHDFRPDYKKLHELRQKFPNVPMMALTATATPRVQKDIL
NQLNMTRPQVFTMSFNRVNLKYSVLPKKPKKVDEDCMIWIKKHYPRDSGIVYCLSRNDCD
AMAESLQRAGILALSYHAGLSDGQRENVQSKWINQDGCQVICATIAFGMGIDKPDVRYVI
HASLPKSMEGYYQESGRAGRDGEISHCVLFYSYTDVHRIKRIISMDREGDKHTKATHYNN
LHSMVHFCENVMECRRIQLLAYFGELKFNKNFCKEHPDVSCDNCAKPNQYKMRNVTEDVK
KIVRFVQENCEKVGARFGKTTQQNRLTLNMLVDIFIGSKSAKVQTGMFGIGAAYSRHNAD
RLFKKLVIDNVLVEDLYITNNNQAVSYISAGPKAMNILSGYMQVEFYETESASSIRKHKA
SVTKNXSKREEMVQECLKELIDLCKQLGKAFGLHYYNIFSTAALKKISERLSSDPEVLLQ
IDGVTEDKLEKYGAEVIQVLQKYSEWQLPAEEQTEPAADGWIDMTRSGTHDDDDSESSTY
FSNQAGRGQKRKKAPFFKFSKKKKGYSNTNSNSKGRGYSSNKSSGSSSFRGGSQSAGRGS
RSSAGNAAGGRRPGFLSVPTPQGNQRPFLKPSFAHMN
NT seq 4254 nt   +upstreamnt  +downstreamnt
atgtcaggtcttccacaaaataatttaaaagaacagctggcgaggcacaacaatgctgct
cagagtaaattatccctggctaaacccaaaacgggagccttctcgttcaaaaagaaatcc
acatctggtacaacraaagtggaatacccgagaaaggtaatcggctcaagtgttttggcc
aacaggaatgtcaatatcactgagagcagtttggtgactaaaccttctttgacattttca
aataagcttgaaagacctcaaaagtcccaaatcagcagcttctttcctgtaagttcaaac
tgcatgtctggatccttcagcccagcaggtaactcgtcttcattgtgtcaaacaccctca
gaaaagactgatagtaagaygagtccagctccaaataaacctgaaagtcaagcttgttgt
ggcagccggattgattcttcaagtttggatgcgtcgggattcccgatcgatgactgggat
gatcttgasgactttgaaacacctgtccgaataaaaaatgactctttcagttcagacaaa
tcagcgaagatcgccaaactgtcatcttctgatgaagaattcccaaaattcacagggaaa
caatacccagatgcttgtcttgagaaatccgaattaaacaatgggaataatgcccagaca
tgtgtggagackgataaaatggaaaaagatgttgatgagaaaacagtttcaccaggactt
gatgtgtttcaagaccmagcagagattgaagttgaggtttctcctctcagaagacccaga
agacgatgtcctcctccgcttgtaacatctgtcttaagtgacagcgatgaggatcctgtt
gacgtgtctaaaccattggaggataagacaaataaaaataaaaaaatgattgatccaaag
gwaatggaacttaatgccaacccagagactgatgaagatcttgattacattcctccttca
cctatttctgagaagacgcctcacacaatgtctgaagtggataaaagcagagataaattg
gggaattcacagagtacagacattcttgtcccgtcaaagagtcctgccagagctttttct
gagcctactgatcaccaagcgaaagacaaaacaaaggaacaactcttcagtttaatggag
tccatttgtgctcttgttgattccatccctgaacatgaactgatcgctttgtcctgcggg
gatgaacttttgctgaagagggcccaaaggaaaaggattcttgcttcaggttgtgacttt
ttgttgaaaatgcagcagccggacagcaccgtgacttctgatcccaactttaaagmaatg
tcttcaagctgtggtgcatctagttttctgtcttccaacaactccgtgtctgcagactac
aagaagcctstgcagtcaagaagatcctcagtcatcactgtggactccgattgttctttt
aatactgatttaaagcccgtgtacaataaggacagcagtatattctgtatggaaaatgag
agtaattgtgactctccatctgcctacagcatcacaaaaccacctttcagtccgtttgag
gaaactagtttagatgttaatgatgttgatgtctccttctcaccgaaaaagactgaggct
gttttgcagaacaaatccagaaacccagttcctgcagctgsagctgaggctgaagcagat
gacttttacattgatgattttgacatagacgactttaacgattctgatatcccagattat
tttgatgaaccctcagtttcatcagtttcaagacaaaacgtcagcaccgtgtctaccaca
gttaaagaaggcggaccaaggaagtcatcatgggagaaggaaccagtgacgcctgtgtct
gcccygaaaccatcaaagatttattcaccagaacccaacttcaaaaacccagctcacgat
cgcttcagaggtttcaacttcccctattctcaggagatgatgaagatttttcataaacgt
tttggacttcatcagtttaggtttaatcaactcgaagcgatcaatgctgctcttctggga
gaagatacgtttgttttgatgcccacaggtggaggtaaaagtttgtgctaccagctgcct
gcctgtctctcacctggagtcactgttgtcatttcccctcttaaatcactaattgtggac
cagatccagaaactcaccaccctcgatattccagcgaccagcctgtcaggtgataaaagt
gacagtgaagcagggaggatttacatgcagctttccaggaaagaccccatcatcaaactg
ctgtatgtcacacctgagaaggtgagtgcaagcaacaggttgatctcagccttgcagaac
ctgtttgagcgaggtcttctggcccgcttcgtcatagatgaggcacattgtgtcagccag
tggggccacgatttccgtccagactacaagaagttgcatgaactgcgtcagaagtttccc
aatgtgccgatgatggcgctgacggccacggccaccccccgtgtgcaaaaagacatcctc
aaccagctaaatatgactcggccacaagtatttaccatgagcttcaacagagtgaacctg
aagtactctgtgctccccaagaaacccaaaaaggttgatgaggactgcatgatctggata
aagaagcactacccccgtgactctggcattgtttactgcctgtctcgtaatgactgtgat
gccatggctgagagtctgcagagggctggaatcctggctctgtcgtatcacgctggactg
agcgatggacaaagagaaaatgttcagagcaaatggatcaatcaagatggctgccaggtg
atctgtgccactatagccttcggcatgggtattgacaagcctgacgtgcgctacgtgatc
cacgccagtctgcctaaatctatggagggttattatcaggagtcaggaagagccggcaga
gatggagagatctctcactgcgttctgttttattcttacactgacgtccaccgcattaag
aggatcatcagcatggacagagagggtgacaagcacaccaaggctactcattacaacaac
ctgcacagcatggtgcacttctgtgagaacgtgatggagtgcagaagaattcagctgctg
gcctactttggggagctgaagttcaacaaaaacttctgtaaagaacatccggatgtcagc
tgtgacaactgtgccaaacccaaccaatacaagatgaggaacgtgactgaagacgtgaag
aaaatcgtgaggtttgtccaggagaactgtgagaaagttggagccaggttcggcaagacg
actcagcagaaccgactgacgctgaacatgctggtggacatctttataggatctaaatct
gccaaggtacaaacaggcatgtttgggattggagcagcctactctcgccacaatgcggat
cgtctctttaaaaaactggtcattgataacgtcctggttgaggacctctacatcactaac
aacaaccaggctgtgtcttacatctccgccggaccgaaagccatgaacatactgtctggg
tacatgcaggtggagttctatgagactgagagtgcgtccagcatcaggaaacacaaagct
tctgttaccaagaacrtctccaagagggaggagatggttcaggagtgtctgaaggagctg
atcgatctgtgcaagcagctcggcaaagcgttcggccttcactattacaacatcttctcc
accgccgccttgaagaagatttctgagcggctttcttctgaccctgaagtccttctacag
attgatggtgtgactgaggacaaactggagaagtatggagccgaagtcattcaggtgctg
cagaaatactcggagtggcagctacctgcagaagagcagactgaacctgctgcagacggg
tggatagacatgacacgaagcggcacgcacgacgacgatgattcagagtcctctacttat
tttagtaatcaagctggtagaggacagaagagaaagaaagctcctttcttcaagttttct
aagaagaaaaaaggatacagcaacacaaactccaattctaaaggtcggggctacagcagc
aacaagtcatcagggtcatccagcttcagaggtgggtctcagagcgctggtcgagggtcc
aggagctcagcaggaaacgcagcgggaggcaggagaccaggattcctttctgttcccaca
cctcagggcaaccagcggccttttttaaaaccctccttygcacacatgaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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