KEGG   Austrofundulus limnaeus (annual killifish): 106522593
Entry
106522593         CDS       T06063                                 
Symbol
cirh1a
Name
(RefSeq) cirhin
  KO
K14548  U3 small nucleolar RNA-associated protein 4
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    106522593 (cirh1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:alim03009]
    106522593 (cirh1a)
Ribosome biogenesis [BR:alim03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    106522593 (cirh1a)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 Lactonase CPSF_A
Other DBs
NCBI-GeneID: 106522593
NCBI-ProteinID: XP_013871116
UniProt: A0A2I4BTN6
Position
Unknown
AA seq 685 aa
MGEFKVHRVRFFDYMPSAIRALAWCRHTQRVAVGRADGSVEIFNFSDNYFQEKVIPGRDG
RTVEALCWAGPRLFSAGLDGEITEYDLENLRPRYSLEAYGGPVWTISCNSQETLLSAGFE
DGTVKLFEILEGKVQFQRNLDRQKGRIVSLSWHPSGSQMAAGMMDMIRVFDAQTGHATHR
LLVERGAGASKSQEVVVWSVVFLSNGTIISGDSAGKVQVWDSFTGTLLRTHLVTKWDVLV
LSVSPDESSVIAGTSEGTVIQFQFVSSTVEQQEQQWVRTRTFKNHSHDVRALVHTDTAVV
SGGVDTQLVVRPLLDKVEKNTQESALRKIIFPHRNLVSCAKKAGLLLFQFPDHLEVWRLG
DSDGKGKAGDSLPLKRKPEKMIQLNRKGQDHICCSALSPCGGWLAYSTVSAVRLYRLQLN
TNNISINKVSKLPKELQSVHQLCFSCDSSKLFASSSLSSVVVVGLSQLECKHLETLKHKS
GSRQPVHLLCPSEDGKWLVTSNTDREVHVFNLHKMKLHCSVPVYGSCPTAVSVHPSGSSL
VCVHADQQILEFSLKQKEYTEWSRTLQRLGLHPLWLQRDTPITTVTYDPRNPAHLALHDA
FMFCIIDQTLPLPEAKTNLYNQQVLRSLPQDQRSRVSHAFKICKNFQNLLGVDLLEDHSL
VVVERPLQDILTRLPAPVRCKKFAT
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgggggagtttaaggtgcaccgggtccggttctttgactacatgcccagtgccatccgg
gccctggcgtggtgccgacacacgcagcgcgtggccgtgggccgggccgacggctccgtg
gagatctttaacttctctgacaactacttccaggagaaggtgatcccggggcgggacgga
cggaccgtggaggctctgtgctgggcgggtccacgcctgttcagcgccggtttggatgga
gagatcacggagtacgacctggagaacctgaggccccgctacagcctggaggcctacgga
gggcccgtttggaccatcagctgcaactctcaggagaccctgctgtcggcgggcttcgag
gacggaaccgtcaagctctttgagatcctggaggggaaggtccagttccagaggaacctg
gaccgacagaaaggtcggatcgtctctctctcctggcacccgtcggggtctcagatggca
gcagggatgatggacatgatccgagtctttgacgcacaaacaggccacgccacacaccgc
ctgctggtggagcgaggtgcgggcgcctcgaagtcccaggaagtggtggtctggagcgtg
gtcttcctgtccaacggcaccatcatcagcggggactctgcagggaaggtccaggtctgg
gacagcttcacggggactctgctcaggactcacctggtcaccaagtgggacgtcctggtt
ctgtccgtctcaccggatgagagcagcgtcatcgctgggacgtctgagggaaccgtgatc
cagtttcagttcgtctcctccaccgtggagcagcaggagcagcagtgggtcagaaccaga
acctttaaaaaccacagccacgacgtgagggcgctcgttcacaccgacaccgccgtggtc
tctggaggagtggacacccagctggtggtgcgccccctgctggacaaagtggagaagaac
acccaggagtctgcgctgcgtaaaatcatttttcctcacagaaatcttgttagttgtgcg
aagaaagcaggactgcttctgttccagtttccagatcatttagaggtgtggaggcttgga
gacagtgatggaaaagggaaggctggtgacagtctgcctctgaagaggaaacctgagaaa
atgatccagctcaacaggaagggacaggatcacatctgctgcagcgccttgtctccgtgt
ggaggatggttagcgtactccactgtctcggctgttcgtctctacagactgcagctgaac
accaacaacatcagcatcaacaaggtgtccaaactgcctaaagaacttcagtcggtccat
cagctctgcttctcctgtgactcctcaaagctgttcgcctcgtccagcctgtcctctgtg
gtggtggtgggtctcagccagctggagtgtaaacacctggagaccctcaaacacaagtca
ggctccaggcagccggtccacctgctgtgtcccagtgaggacgggaagtggttggtgacg
tccaacacagaccgagaggtccacgtgttcaacctgcacaagatgaagctccactgttcg
gttccggtgtacggttcctgtcccacggcggtgtcggtccacccgtcgggcagcagcctg
gtctgtgtccacgctgaccagcagatcctggagttctccctgaagcagaaggagtacacg
gagtggagccggactctgcagagactggggctccaccccctctggctgcagagggacacg
cccatcaccactgtgacctatgaccccaggaacccggcccacctggccctgcacgacgcc
ttcatgttctgcatcatagaccagactctgccacttcctgaagccaagacgaacctttac
aaccagcaggtcctcaggagccttcctcaggaccagaggagcagagtcagccacgccttc
aagatctgcaagaacttccagaacctcctgggtgtggacctgctggaggaccactctctg
gtggtggtggagcgccccctgcaggacatcctgacccggctgccggctccggtccgctgc
aagaagttcgccacgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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