KEGG   Austrofundulus limnaeus (annual killifish): 106534459
Entry
106534459         CDS       T06063                                 
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106534459 (clp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:alim03019]
    106534459 (clp1)
Enzymes [BR:alim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     106534459 (clp1)
Messenger RNA biogenesis [BR:alim03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     106534459 (clp1)
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1 ATP_bind_1 MMR_HSR1 AAA_16 AAA_22 TniB AAA_18
Other DBs
NCBI-GeneID: 106534459
NCBI-ProteinID: XP_013886558
UniProt: A0A2I4D2U9
Position
Unknown
AA seq 445 aa
MSVMATLEGLEKTSEDPETSGKTCTRFDLEKETELRFEVEAGDGSDQVELELISGLAEVF
GSELNRNKKYTFGPGSKIAVFTWQGCTVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRK
QAERDNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSA
LCIERPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGG
CIINTCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGV
AERSKECRRETRDEKIREYFYGFRGLSFFPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMS
QDDTQLKLVPVTPGRDLTYHVLSVSSVDDGDEDARKSIVESPVCGFIVVTHVDTQVQVMK
VLSPAPRPLPRHTLLIMDIRFMDMK
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgtcggtcatggcaacattagagggtttggagaagacgagtgaggatccggaaacatcg
gggaagacgtgcacccggtttgacctggagaaggagaccgagctccggttcgaggtggag
gcaggtgatgggtcagatcaggtagagctggaactcatctcaggactggccgaagtgttt
ggatcagagctgaaccgcaacaagaagtacacatttggaccgggctccaagattgcagtt
ttcacctggcaagggtgcactgtgaatctgtacggaaaacctgaagttgcttacgtgtcc
aaggacacacctatgttgctctacttgaacacacacgctgccctggaacagatgagaaaa
caagcagagcgagacaacgagaggggaccgagggtgatggtggtgggacctacagacgtt
gggaagtccacagtgtgtcggctgcttctcagctatgctgtgagagttggaaggaggcca
acactcgtggagctagatgttggacagagtggggtatctgtcccaggaaccgtgtcggct
ctgtgcatcgagcgcccggctgatgtggaggagggtttctccgttcaggctcctttggtg
taccactttggctcgactactccagggaccaatatcaaactttacaacaagctgacgtcg
tgtcttgctgaggtgttttctcagcgctgtgaggtaaaccggaaggccagcgtgggaggc
tgcatcatcaacacctgcggctgggtgaaaggttctggatatcaggctctggtccactgt
gcctccacctttcaggtggacgtggtgctagtgttggaccacgagaggctctacaacgag
ctcaagcgagacctgcctcacttcgtgcgagtcgtcctcctgcccaaatctggtggcgtg
gcagaacgctccaaggagtgccggcgagagacccgggacgaaaagatccgcgagtacttc
tatggcttccgcggcttgtccttcttccctttctctttcgaagtgcgcttctcggacgtg
cgcatctacaagatcggggcgccgtccatcccggactcgtgcttgcctctggggatgtct
caggacgacacgcagctgaagctcgtacccgtgacgccagggagagacctgacgtatcac
gttctgagcgtgagcagcgtcgacgacggggatgaagacgccagaaagagcatcgtggag
agtcctgtgtgtggttttatcgtggtcactcatgttgacactcaggtgcaggtgatgaaa
gtgttgtcccccgcgcccagaccgctgcccaggcacacgctgctcatcatggacatacgc
ttcatggacatgaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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