KEGG   Austrofundulus limnaeus (annual killifish): 106534715
Entry
106534715         CDS       T06063                                 
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2
  KO
K10140  DNA damage-binding protein 2
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03420  Nucleotide excision repair
alim04115  p53 signaling pathway
alim04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106534715 (ddb2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    106534715 (ddb2)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    106534715 (ddb2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:alim04121]
    106534715 (ddb2)
   03400 DNA repair and recombination proteins [BR:alim03400]
    106534715 (ddb2)
Ubiquitin system [BR:alim04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     106534715 (ddb2)
DNA repair and recombination proteins [BR:alim03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      106534715 (ddb2)
SSDB
Motif
Pfam: WD40
Other DBs
NCBI-GeneID: 106534715
NCBI-ProteinID: XP_013886894
UniProt: A0A2I4D3V2
Position
Unknown
AA seq 460 aa
MVTGENRNRQCLQEPFVRSLSSYHFHGSSSPFDRRITCLEWHPTHPTTLAAATKGGDILM
LNYTNPTKESFFQGNGAGDSIGGMKFCPTDFSKVYLASGEGTLTLKSFEGHPSTLLSRTG
DCDHDYHNVCFRFRDLGNHQVSWVLFGSCRSQQRVPAGQCQLTGQTVTEHLEGEPAAVRT
LLRRLKGCLGVFQAEAHHTGWIFSDKLHRAKVTHAEFNPRYDWLLATASVDHTVKLWDLR
NLKDKKSFLYELPHEKAVNSAYFNPSDCSKLLTTDQNDQIRVYASCDWTKPQQIIQHPHR
QFQHLTPIKATWHPIYDLIVAGRYPDDRICTGDEKTIDIFDSNSGELVFQLYDPVASGIK
SVNKFSPRGDVIGSGMGVTLLLWDHDESLLGDGQKPQEEMPTSSGLSRGQRRSQQRSSRD
RKGSAADAKLKKKLASLEETETKTKTGCTKQKPAQTKRKK
NT seq 1383 nt   +upstreamnt  +downstreamnt
atggtgactggggagaacagaaacagacaatgtctccaggagcccttcgtccgctctctg
tcctcctatcacttccacggctccagcagcccgtttgaccgcaggatcacctgtttggag
tggcaccccacccaccccaccaccctggctgcagccaccaaaggtggagacatcttaatg
ttgaactacaccaaccccacgaaagaatccttctttcaagggaacggagcaggagactcg
attggagggatgaagttctgtcccacagatttttccaaagtctatttggcttctggggaa
ggcacgctcaccctgaagagctttgagggccacccatccactctgctgtccagaaccgga
gactgtgaccacgattaccacaacgtttgcttcaggttcagagacctgggaaaccaccaa
gtcagctgggtcctgttcggcagctgtcgaagccagcaacgggtccccgctggacagtgt
caactgacgggccagacggtgacggagcaccttgagggagaaccggctgcagtgcgcaca
ctcctccgccgactcaagggatgcttgggcgtgtttcaagccgaggcacaccacacaggt
tggatttttagtgataagctgcacagagccaaagtgacccacgcagagtttaacccwcgg
tacgactggttgctggcgacggcctcagtggaccacacagtgaagctctgggacctgagg
aacctcaaagacaagaaaagcttcctttacgaattacctcacgagaaagctgtcaactca
gcctatttcaatccgtcggactgctccaagctgctcaccacagatcagaacgaccagatc
cgtgtttacgcttcctgtgactggaccaagcctcagcagatcattcagcacccacacaga
cagtttcagcacctcacacccatcaaagccacgtggcatcccatatatgacctgattgtg
gctgggcgctaccctgatgaccggatctgcactggcgatgagaaaaccatcgacatcttt
gactccaacagtggcgagctcgtgttccagttgtacgatccmgtcgcctcagggatcaaa
tctgtcaataaattcagtccaaggggtgatgtgattggatctggcatgggcgtcacgctg
ctgctctgggaccacgacgagtcgctgctcggcgatgggcaaaaaccgcaggaagaaatg
ccgacttcgtccggtttgtcgcggggccagaggaggagtcagcagcgctccagcagagac
cgcaaaggttcagctgcggatgcaaagctcaagaagaaactcgcttctctggaagagact
gagaccaaaaccaagactgggtgcactaaacaaaaaccagctcagaccaagaggaagaag
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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