KEGG   Allochromatium vinosum: Alvin_2370
Entry
Alvin_2370        CDS       T01168                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
alv  Allochromatium vinosum
Pathway
alv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:alv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Alvin_2370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:alv03021]
    Alvin_2370
   03400 DNA repair and recombination proteins [BR:alv03400]
    Alvin_2370
Enzymes [BR:alv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Alvin_2370
Transcription machinery [BR:alv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Alvin_2370
DNA repair and recombination proteins [BR:alv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Alvin_2370
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: ADC63287
UniProt: D3RMZ9
Position
complement(2689265..2693446)
AA seq 1393 aa
MAYSFTEKKRIRKDFGKRPSILDVPFLLATQIDSYREFLQADVSVKDRRDLGLHAAFKSV
FPIESYSGNAVLEYVKYRLGDPVFDERECHLRGATFAAPLRVLLRLVIYDKEAPAGSKVV
KDVREQEVYMGELPLMTETGTFIINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLPATVLLRALGYGVEDILGRFFETDTFRLQG
QTVTLDLVPERLRGETVGFDVKIGDEVLVESGRRVTARHIRELQKAGVDRLEVPADFLLG
RILAHAQVDSDTGEVFAEANDPITPELLETLFRKGIETLETLFVNDLDQGPYISETLRID
PTTNDLDAQIEIYRMMRPGEPPTKEAAQNLFHNLFFTSDRYDLSAVGRMKFNRRLGRADE
TGPGVIYDGRYFAGRTDDFSKKLFDQYGEGASDILDSLKVLVELRNGRGMVDDIDHLGNR
RIRCVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQL
SQFMDQNNPLSEVTHKRRVSALGPGGLARERAGFEVRDVHPTHYGRVCPIETPEGPNIGL
INSLAVYARTNSYGFLETPYRKVEDGRVTDRIDYLSAIEEGNFVIAQANATLDADGRLAD
ALVSCRHANEFAMRAPEEVQYMDVSPRQIVSVAASLIPFLEHDDANRALMGSNMQRQAVP
TLRAEKPLVGTGMERVVARDSGVYVVARRGGVIESVDAARIVVRVNDDEAAKTPDVPGVD
IYNLTKYTRSNQNTCINQRPLVKLGDAIARGDVLADGPSTDMGELALGQNLRVAFMPWNG
YNFEDSILISERVVQEDRFTTIHIEELSCLARDTKLGPEEITGDIPNVGESALSKLDESG
IVYVGAEVRDGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRLPTGMNGTVV
DVQVFTRDGVDKDKRAIEIEEMELERVRKDFADQQRIMENDTFQRVEKLLVGRVADGGPG
GFRPGSEITKDYLDSLKSKGSRDGWFEIRVRDEDVATQLEAVAAQVKQQREEFRERYEVK
KRKVASGDDLAPGVLKMVKVYVAVKRRIQPGDKMAGRHGNKGVISKVVPVEDMPFSADGV
PVDIVLNPLGVPSRMNVGQVLETHLGWAAQGLGEKIGRMLQRQTAIGELRDFLEQVYNTS
GKQEDLASFSDDEILELARNLTRGVPLATPVFDGATEEEIKAMLKLADRDNTEQGVPSGQ
TILFDGRSGDQFERPVTVGYMYMIKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQR
FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESFNVLVKE
IRSLAINVELQQD
NT seq 4182 nt   +upstreamnt  +downstreamnt
atggcctattcgttcaccgaaaagaagcgcatccgcaaagacttcggcaagcgtcccagt
atcctggacgtcccgttcctgctggccacgcagatcgactcctatcgcgagttcctgcaa
gccgatgtgtcggtcaaggaccgccgggatctcgggttgcatgcggccttcaagtccgtg
ttccccatcgagagctactcgggcaacgctgtgctggagtatgtcaagtatcgcctgggc
gatccagtgttcgacgagcgcgagtgtcatctgcgtggcgcgaccttcgcggcgcccctg
cgcgtgctgctgcggctggtgatctacgacaaggaggccccggccggctccaaggtcgtc
aaggacgtgcgcgaacaggaagtctacatgggcgaactgccgctcatgaccgagaccggc
accttcatcatcaacggcaccgagcgcgtcatcgtttcgcagttgcaccgctcgcccggt
gtcttcttcgaccatgacaagggcaagacccactcctcgggcaagctgctgttctcggcg
cgcgtcattccctatcgcggctcctggctcgacttcgagttcgatcccaaggacaacgtc
ttcgtgcgcatcgaccgtcggcgcaagctgccggccacggtgctgctgcgtgcgctcggc
tatggcgtcgaggacatcctcggacgtttcttcgagaccgacaccttccgcctccagggt
cagaccgtcacgcttgatctggtccccgagcgtctgcgcggcgagaccgtcggcttcgat
gtgaagatcggcgacgaggtactggtcgagtccggccggcgtgtgacggcgcgccacatc
cgcgaactccagaaggccggcgtcgatcgtctggaagtgccggcggacttcctgctcggc
cgcatcctggcgcacgcccaggtcgacagcgacaccggcgaggtcttcgccgaggccaat
gatccgatcacgcccgagttgctggagaccctgttccgcaagggcatcgagaccctggag
accctgttcgtcaacgatctcgaccaggggccttacatctccgagaccctgcgcatcgat
ccgacgaccaacgatctggacgctcagatcgagatctatcgcatgatgcgtcccggcgag
ccgccgaccaaggaggccgcccagaatctgttccacaacctgttcttcacctccgatcgc
tacgatctctcggcggtcggtcgcatgaagttcaaccgccggctcggtcgtgccgacgag
acggggccgggcgtcatctatgacgggcgctatttcgccggtcgcacggatgacttctcc
aaaaagctcttcgaccagtacggcgagggtgcctccgacatcctcgattcgctcaaggta
ctggtcgagctgcgcaacggtcgcggtatggtcgacgacatcgaccatctgggcaaccgt
cgcatccgctgcgtcggcgagatggccgagaaccagttccgcgtcggtctggtgcgtgtc
gagcgcgcggtcaaggagcgtctgtcgctggccgagtccgaggggctgatgccgcaggaa
ctcatcaacgccaagccggtgtcggcggcgatcaaggagttcttcggttcctcgcagctc
tcgcagttcatggaccagaacaacccgctgtccgaggtcacgcacaagcggcgcgtctcg
gcgctcggtcccggcggtctggcgcgcgagcgggccggcttcgaggtgcgcgacgtccat
ccgacccactatggccgcgtctgcccgatcgagacccctgaaggtccgaacatcggtctg
atcaactcgctggcggtctatgcccgcaccaactcctacggcttcctggagacgccctat
cgcaaggtcgaggacggccgtgtcaccgatcgcatcgactatctgtcggcgatcgaggag
ggcaacttcgtcatcgcccaggccaacgcgaccctggacgcggacggtcggctcgccgat
gcgctggtctcttgccgtcatgccaacgagttcgccatgcgcgcacccgaagaagtccag
tacatggacgtctcgccgcgtcagatcgtctcggtggccgcgtcgctgatcccgttcctg
gagcacgacgacgccaaccgcgcgctcatgggttcgaacatgcagcgtcaggccgtgccc
acgctgcgcgccgaaaagccgctggtcggcaccggcatggagcgcgtggtggcgcgtgac
tcgggcgtgtacgtggtcgcgcggcgcggtggtgtcatcgagtcggtcgatgcggcgcgt
atcgtggtgcgcgtcaacgacgacgaggcggccaagaccccggacgtgccgggcgtcgac
atctacaacctgaccaagtacacccgctccaaccagaacacctgtatcaatcagcgtccg
ctggtcaagctgggtgatgcgatcgcgcgcggcgatgtcctggccgacggtccctcgacc
gacatgggtgagctggcactgggtcagaacctgcgcgtggccttcatgccctggaacggc
tacaacttcgaggactcgatcctgatctcggagcgcgtggtgcaggaggatcgcttcacc
accatccatatcgaggagctgtcctgtctggcgcgcgacaccaagctcgggccggaggag
atcacgggcgacatcccgaacgtgggtgagtcggcgctctccaagctcgacgagtcgggc
atcgtctatgtcggcgccgaagtgcgtgacggcgacatcctggtcggcaaggtcacgccc
aagggcgagacccagctgaccccggaagagaagctgctgcgcgccatcttcggcgagaag
gcctccgacgtgaaggacacctcgctgcgtctgcccaccggcatgaacggcaccgtggtc
gacgtccaggtcttcacccgcgacggcgtggacaaggacaagcgtgccatcgagatcgag
gagatggaactggagcgcgtgcgcaaggacttcgccgaccagcagcgcatcatggagaac
gacaccttccagcgtgtcgagaagctcctggtgggccgggtcgccgacggcggtccgggc
ggcttccgtcccggttccgagatcaccaaggactatctcgattcgctcaagtccaagggt
tcgcgcgacggctggttcgagatccgcgtgcgtgacgaggacgtcgccacccagctcgaa
gccgtcgccgcccaggtcaagcagcagcgcgaggaattccgcgagcgctatgaggtcaag
aagcgcaaggtcgccagcggtgacgatctggcgcccggcgtgctcaagatggtcaaggtc
tatgtggccgtgaagcgccgcatccagcccggcgacaagatggccggccgtcacggtaac
aagggtgtcatctccaaggtggtgccggtcgaggacatgccgttctcggccgacggcgtg
ccggtcgacatcgtgctcaacccgctcggcgtgccctcgcgcatgaacgtcggtcaggtg
ctggagacccatctcggttgggcggcccagggtctgggcgagaagatcgggcgtatgctg
caacgccagacggcgatcggcgagctgcgcgacttcctggagcaggtctacaacaccagc
ggcaagcaggaagatctggcgagcttctccgacgacgagatcctggagctggcgcgcaat
ctgacccgaggcgtgccgctggccacgccggtcttcgacggtgcgaccgaggaagagatc
aaggcgatgctcaagctcgccgaccgcgacaacaccgaacagggcgtgccgagcggtcag
accattctgttcgacgggcgctccggcgaccagttcgagcgtccggtcactgtgggctac
atgtacatgatcaagctcaaccatctggtcgacgacaagatgcacgcccgttcgaccggt
ccctacagcctggtcacgcagcagccgctgggcggcaaggcgcagttcggcggtcagcgc
tttggtgagatggaggtctgggcgctggaagcctatggcgccgcctacaccctgcaggag
atgctcacggtcaagtccgacgacgtcaacgggcgcaccaagatgtacaagaacatcgtg
gatggggatcaccgcatggaggccggcatgcccgagtccttcaacgtgctggtcaaggag
atccgctcgctcgccatcaacgtggagctacagcaggattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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