KEGG   Arabidopsis lyrata (lyrate rockcress): 110226306
Entry
110226306         CDS       T01578                                 
Name
(RefSeq) polyadenylate-binding protein RBP45A-like
  KO
K13126  polyadenylate-binding protein
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015  mRNA surveillance pathway
aly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110226306
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110226306
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    110226306
   03041 Spliceosome [BR:aly03041]
    110226306
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     110226306
   mRNA cycle factors
    Stress granule specific factors
     110226306
Spliceosome [BR:aly03041]
 Complex C
  Other components
   Complex C specific factors
    110226306
SSDB
Motif
Pfam: RRM_1 Nup35_RRM_2 RRM_occluded Nup35_RRM RRM_Rrp7
Other DBs
NCBI-GeneID: 110226306
NCBI-ProteinID: XP_020873037
Position
Unknown
AA seq 454 aa
MAHIPHKAKISDIVDFFKDVGEVVHVRLAIKRDGGRTGSGFVEFASANETKKALEKKNGE
YLLHRKIILNVAKIASSLPLPKHCIDHKVWYEDCLRRGEDETPPDFAEEVLFVANLSPQT
KILDIFDFCKDVGEVVSVRLIANHEGKHVGCAFVEFLSANEANKVLEKKNGEYLHNHKIF
LMKGHGETPDFAEAVATRKTKTLFVAHLAPQTIISDIINFFKDVGQVVHVRLIVNHNGKH
VGWGFVEFASNDEAEKALEKKNGEYLQDGKIFLEAAKIAPFPPPKWCIDHKVWYEDYLRQ
ESLQIDEDGAVEGLAETPYFVEEARKKTLFVANLPPQTNIPKIMYFFKDVGEVVRVRLIV
DHRGKHVGCGYFEFASANEAEKALEQKNGKSLRYHHIFLDVAEIAPYPLQPKYNLVEKLW
YEDNLLREPNLKQQKEKSDGFCGKKTTFSSRDDC
NT seq 1365 nt   +upstreamnt  +downstreamnt
atggcccatatccctcacaaagctaaaatatcagatatcgtcgatttctttaaagatgtt
ggagaagttgttcatgttcgacttgctataaaacgagatggtgggcgtactggctctggc
tttgttgaatttgcttctgccaatgaaacaaaaaaggcactggaaaagaagaatggtgaa
tatttgctccatcgcaagataattctcaatgttgctaagatagcttcttcattgcctctt
cctaagcattgcatagatcacaaggtttggtacgaagactgccttcgacgaggagaagat
gagacacctcccgatttcgctgaggaagttctctttgttgccaatctctctccccaaact
aagatattagatatcttcgatttctgcaaagatgttggagaagttgtcagtgttcgactt
attgcaaaccatgagggcaagcatgtgggctgtgcctttgttgagtttctttctgctaac
gaagcaaataaggtgctggaaaagaagaatggtgaatatttgcacaatcataagatcttt
ttgatgaaaggacatggtgaaactcccgattttgctgaggctgttgccacaagaaaaaca
aagacgctctttgttgcccatcttgctccccaaactataatatcagatatcatcaatttc
ttcaaagatgttggacaagttgttcatgttcgacttattgtcaaccacaatggcaagcat
gtgggctggggatttgttgagtttgcttctaatgacgaagcagagaaggcgctggagaag
aagaacggtgaatatttgcaggatggcaagatttttcttgaagcggctaagatagctcca
ttccctccacccaagtggtgcatagatcacaaggtttggtacgaagactaccttcgacaa
gaaagccttcagatagatgaagatggggcagtggaaggacttgctgaaactccctatttc
gttgaggaagcaagaaaaaagacactctttgttgccaatctccctcctcaaactaatata
ccaaagatcatgtatttcttcaaagatgttggagaagttgttcgtgttcgacttattgtt
gaccataggggtaagcatgtgggctgtggctattttgagtttgcttctgctaatgaagca
gagaaggctctggaacagaagaatggtaaaagtttgcgctatcatcatatctttcttgac
gtggctgagatagctccataccctctccaacccaagtacaaccttgtagagaagctttgg
tacgaagacaaccttctacgagaaccgaatctgaagcaacagaaggaaaaatccgacgga
ttctgcggtaagaagactaccttctcttccagggacgactgctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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