KEGG   Arabidopsis lyrata (lyrate rockcress): 110227590
Entry
110227590         CDS       T01578                                 
Name
(RefSeq) small RNA degrading nuclease 5 isoform X1
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    110227590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:aly03009]
    110227590
Ribosome biogenesis [BR:aly03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    110227590
SSDB
Motif
Pfam: RNase_T YfkB CoA_binding_2
Other DBs
NCBI-GeneID: 110227590
NCBI-ProteinID: XP_020877845
Position
Unknown
AA seq 569 aa
MSSSKRKRDAETAAEDCDDGSDKSNTGNSFFDIYGPEAKAELDFKSPDTTLNLQDVQGLV
TWVLAEGFMPSWVFIKNKPLIPKVVMLYLPGLDAALYLSQSKTLSSLKSCCGNPIALLAL
RLVCVVDEMRTIDTILTCKGKRKKTVTSSVEPPPLVSSPEACTLMGKSFVELTKDIPFPV
TYYTLSRKEMEQNGYTFEKLEFTPTLPAPTGSCPHEIVALDCEMCITKEGLELTRVTLVD
IQGQVLLDKLVKPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHS
LENDLLSLKISHNLVIDTAVLYKHPHGRSYKTKLRILAKKFLAREIQLSESGHDSVEDAK
AAMDLALLKIKHGPDFGSPPEVIRKKLLAILNESGKTTSIIDNVNIVKRYASESSNSIPV
FSDDEALSKAVKEVKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNKNP
GLKKSNVSPETKEILKKMNDRVQSVYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDENEI
GFDREKVVKVLEELQAQAEVALCFVGIKQ
NT seq 1710 nt   +upstreamnt  +downstreamnt
atgtcgtcttcgaagcggaagcgcgacgccgaaaccgccgcggaagattgtgacgacggt
agtgataagagcaataccggaaacagtttcttcgatatatatggacccgaagcgaaagca
gaactcgatttcaaaagccctgatacaacattgaacttacaagatgttcaaggacttgtg
acatgggttcttgcagaaggttttatgccttcgtgggtgtttattaagaacaagcctctc
attccaaaggttgtaatgctctaccttcctggattggatgcagctttatacttatcacag
tctaaaacactgtctagtttgaaatcatgttgcggtaatcctatcgcgcttttagctttg
aggttggtctgtgtagttgatgagatgaggacaatcgatacgatccttacttgcaagggt
aaaagaaagaaaactgttactagttcagtggaaccacctcctctagtatctagcccagaa
gcatgcactctgatggggaaatcattcgttgagctcacaaaagatataccattccctgtt
acttattatactttaagtcgaaaggaaatggaacaaaatggatacacttttgaaaaactc
gaatttacacctacacttcctgcaccaacaggatcctgtccacacgaaattgtggctctt
gattgcgagatgtgtattacaaaggagggtttggagttgacgagagtgacactggtggat
atccaaggacaggttctattagataaattagtcaagccaacaaatcctattactgattac
aacacaaggtatagtggaataacagctgtgatgatggagggagttacaacaactcttaaa
gatattcaggaagagttcttaaagctggttttcaaagagaccatattagtcggacactcc
ttggaaaatgacttgttatctttgaagatctctcataatctggtgattgacactgcagta
ttatacaagcatccacatggtagatcttataaaactaaacttcgaattctagcaaaaaag
tttcttgctagagagatacagctgtctgaatccggacatgacagcgtggaggatgcaaaa
gcagccatggatttggcactattgaagattaaacatggacctgattttggttcaccaccg
gaagtgataagaaaaaagctcctcgccattttgaatgagagcgggaaaacgacttctata
atcgacaatgtcaacatcgtgaagcgatatgcttctgagtcatccaattcaattccagtt
ttttctgacgacgaagcactttcaaaggccgtgaaggaggtaaagaacaagcggtcacaa
ttcgtttggacacaattctcagaattgaatgcacatttccagagcagagcggatgatcca
cagaaactaaattccagactagccgagatgatctcattgcttacatgtaacaaaaacccc
gggcttaagaaaagcaatgtttcacctgaaacaaaggaaatcttaaagaaaatgaacgat
agagtccaatccgtttacgctgcattacccacaaatgcgatgtttatagtttgcaccgga
cacggagacacatccattgtacacagagtgcggaaaatgcttaaagatgagaatgaaatc
gggtttgaccgtgagaaagttgtgaaggttctcgaagagcttcaagcacaagccgaagta
gctctctgttttgtaggtatcaagcaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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