KEGG   Arabidopsis lyrata (lyrate rockcress): 9300951
Entry
9300951           CDS       T01578                                 
Name
(RefSeq) DNA topoisomerase 3-alpha
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    9300951
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    9300951
   03400 DNA repair and recombination proteins [BR:aly03400]
    9300951
Enzymes [BR:aly01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     9300951
DNA replication proteins [BR:aly03032]
 Eukaryotic type
  DNA Topoisomerases
   9300951
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     9300951
   FA (Fanconi anemia) pathway
     9300951
SSDB
Motif
Pfam: Topoisom_bac Toprim zf-GRF zf-C4_Topoisom Antimicrobial18
Other DBs
NCBI-GeneID: 9300951
NCBI-ProteinID: XP_002864876
UniProt: D7MQJ2
Position
Unknown
AA seq 923 aa
MSRRGGGPVTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRML
MTSVIGHLMELEFANRYRKWHSCDPADLYQAPVMKHVPEDKKDIKKTLEEEARKSDWLVL
WLDCDREGENIAFEVVDVCRAVKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVD
ARQEIDLRIGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQA
HEPEEFWTINCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERF
KYPPYPLNTIELEKRASRYFRLSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLCAMV
EEQRRHPAWGSYAQRLLEPEGGLWRNPGNGGHDDKAHPPIHPTKFSSGESNWSRDHLNVY
ELVVRHYLACVSQPAKAAETTVEIDIAGERFSASGRAILAKNYLEVYRFESWGGSVIPVY
EKGQQFIPTTLTLDSAVTRPPPLLCEADLLSCMDKAGIGTDATMHDHIKKLLDRGYATKD
ANTRFSPTNLGEALVMGYDDMGYELWKPNLRALMERDMNEVSVGRKTKAEVLETCLQQMK
ACFLDARVKKSKLLEAMTIFFERSNNTDESESQTAGEVIRRCNLCNESDMALRKNRDGNF
MVGCMNYPQCRNAVWLPGPTLEASVTTDVCQTCGPGPVYKILFKFRQIGIPPGFDVNHLG
CIGGCDDILKQLIDICGTGSRSQARRAPGTVPSNNIQGSNTRQGNFCIHCQQRGHASANC
PSRATAFRNSRLTATNPRNDESTVSCNTCGTQCVLRTANTEANRGRQFFSCPTQGCSFFA
WEDSINNSSGNATTGSNSGGSGRRGRGRGGRGGQSGGGRRNSGTSFVSATGEPVSGIRCF
SCGDPSHFANVCPNRNNSNGNYY
NT seq 2772 nt   +upstreamnt  +downstreamnt
atgtcgcgacgagggggtggccccgtgacggtgctgaacgtggcggagaagccgtccgtg
gcgaagtcagtggcggggattctatcccgtggaactttccggactcgggagggtaggtct
cggtacaacaaaattttcgagttcgattacgccatcaatggccagccatgtcgtatgcta
atgacctccgtcattggccacctgatggagcttgaattcgccaatcgttaccgcaaatgg
cactcctgtgacccggcagatctgtaccaagctccggtcatgaaacacgttcccgaggac
aaaaaggatattaagaagacattggaggaggaagcaaggaaaagcgactggcttgtgctg
tggcttgattgtgatagggaaggtgaaaacattgcatttgaagttgtagatgtttgcaga
gctgtcaaacataatctttttatacgcagggctcatttctctgcgttaattgacagagat
attcatgaagcagttcagaatcttagagatcctaatcaattgtttgctgaggctgtagat
gctagacaagaaatagacctacgcattggtgcttctttcactagatttcagactatgctg
ctgagagataggtttgctattgactccacgggtgaggagaggagtcgtgttataagttat
ggtccttgtcagtttcctactcttggctttattgtagagcgatactgggagatccaggca
catgaaccagaagagttttggacaatcaactgttctcaccaatcagaagaaggccttgcc
acctttaattggatgcgtggtcatctcttcgattacgcttcagctgtcatattatatgag
atgtgcgttgaggaacctactgccactgtaatgaatgtcccacatccaagggaacgattc
aaatatcctccttatcctttgaacaccattgaacttgaaaaacgtgcttcaagatacttc
cgcctgagttcagagcacaccatgaaggtggcagaagaattataccaggctggtttcatc
agctatcctcgtacagagactgattctttttctagcaggacagatttatgtgctatggtg
gaggaacaaagaagacatcctgcctggggttcatatgcacaaagactattagagcctgag
ggcggcctctggagaaaccctggtaatggtggtcatgatgacaaggctcacccacccatt
cacccgacaaagttttctagcggagagtctaactggagtagagatcaccttaatgtatat
gagctagttgtccgccattacctagcatgtgtttcccagccagcaaaagctgctgaaact
acagtcgaaattgatattgctggtgaacgcttttctgcatctgggagagcaatattagct
aaaaattaccttgaggtgtaccgctttgaatcatgggggggttcagtgattcccgtgtat
gaaaaagggcagcagtttatcccaacaactttgactcttgattcagctgtaacgaggcca
ccaccgctattgtgtgaagctgacttactgagttgtatggacaaggcaggcattggcacc
gatgctacaatgcacgaccacataaagaaactccttgatcggggttatgcaacaaaggat
gctaatacgcggttttctccaaccaacctgggtgaggcgcttgtgatgggatatgatgac
atggggtatgaactttggaaaccaaatctcagagcccttatggaacgtgatatgaatgaa
gttagtgttggcaggaagaccaaagctgaggttcttgaaacatgtttgcagcaaatgaaa
gcttgtttcttagatgcaagagtaaaaaaatcaaagctcctagaagcaatgacaattttc
tttgaaagatctaataacactgatgaaagtgaaagtcagacagctggtgaagttatccga
cgatgcaacctctgcaatgaatcagatatggcactcaggaagaacagggatggcaatttc
atggttgggtgcatgaattatcctcagtgtcgaaatgcggtctggcttcctggaccaaca
ttggaagcatctgtcactactgatgtttgtcaaacctgtggtccaggcccagtctacaag
atacttttcaagttccgtcaaattggaattccaccaggctttgatgttaatcacttaggt
tgcatcggtggctgtgatgacattcttaaacagttgatagacatatgtggaactggatcc
cgttctcaagcaaggagagctccaggtactgtaccgtcaaacaatatccaaggaagcaac
acacgacagggtaatttctgcatacattgccagcaacgaggacatgcgtctgctaattgt
ccctcacgggctacagcatttcgaaattctcgtcttactgcaacaaatccgagaaacgat
gaaagtacagtttcatgtaacacttgtggaacacaatgtgttcttcgtacagccaacaca
gaagctaacaggggaagacaattcttctcatgtccaacacaaggctgcagtttctttgca
tgggaagatagcattaacaacagtagtgggaatgcaacaactgggtctaatagcggcgga
agcggtagacgtggtcgtggccgtggaggtagaggcggccaaagcggtggaggacgacgc
aactctggaacaagctttgtctctgcaactggagagccagtgagtggtataaggtgcttc
tcatgtggtgatccttcacattttgctaacgtttgtcctaatcgtaataactctaacggt
aactattactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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