KEGG   Arabidopsis lyrata (lyrate rockcress): 9326492
Entry
9326492           CDS       T01578                                 
Name
(RefSeq) sm-like protein LSM3A
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018  RNA degradation
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9326492
  09123 Folding, sorting and degradation
   03018 RNA degradation
    9326492
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9326492
   03041 Spliceosome [BR:aly03041]
    9326492
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     9326492
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     9326492
Spliceosome [BR:aly03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    9326492
 Complex C
  U2 snRNP components
    9326492
SSDB
Motif
Pfam: LSM TIG_SUH Glutaredoxin
Other DBs
NCBI-GeneID: 9326492
NCBI-ProteinID: XP_002893156
UniProt: D7KJZ1
Position
Unknown
AA seq 98 aa
MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVE
IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTTT
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtccgtcgaggaagacgccaccgttagagagccactcgatctgattcggctgagtatc
gaagagaggatctatgtcaagctccgatcagaccgtgaactccgcggcaagcttcacgct
tttgatcagcatttgaatatgattctgggtgatgttgaagaggttattacgactgtagaa
atcgacgacgagacatacgaagagattgttcggacaacgaagcgaacggttccgttttta
ttcgtgagaggagatggagtgatattggtgtcaccgcctttgaggacgacgacctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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