KEGG   Arabidopsis lyrata (lyrate rockcress): 9329059
Entry
9329059           CDS       T01578                                 
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022  Basal transcription factors
aly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    9329059
  09124 Replication and repair
   03420 Nucleotide excision repair
    9329059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aly03021]
    9329059
   03400 DNA repair and recombination proteins [BR:aly03400]
    9329059
Transcription machinery [BR:aly03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     9329059
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     9329059
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 9329059
NCBI-ProteinID: XP_020869444
Position
Unknown
AA seq 301 aa
MPSVVSKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI
ATGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRI
PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP
IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGV
DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRKAPS
T
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccttccgttgtttctaagcagtattcagacgatgttagtcttctagttttgttgctt
gatacgaatcctcttttctggagcactacatcgattaccttctctcaattcctttctcat
gtgcttgcgtttctgaatgcagttttgggcttaaatcagttgaaccaagttgtagttata
gctactggatacagttcctgtgattacatttatgattcttctttgacatccaatcatgga
aatctcgagagcaacggaactggaatgcctgcactttttggttctttgctgaagaaattg
gaagattttgttacaaaagatgaggagctcagcagggaggaagtgtctgaggatagaata
ccttcttgtctcttgtcaggatcactctccatggctctttgctatatacagagggttttc
cgttctggacatcttcatccccagcctcggatattatgcttgcaaggttccccagatggc
ccggaacaatatgttgctgttatgaactctatcttctctgcccaacgcttaatggtaccc
attgattcgtgttacataggagttcagaactcagcatttttgcagcaggcatcttatata
actggtggtgtacatcatacacctaaacagttggatgggctgtttcagtatctaacgacg
atttttgcaactgacttgcattcccgcagttttgtacaacttcctaaacccattggtgtt
gattttcgcgcatcgtgcttttgccacaagaagacaatagatatgggctacatatgttca
gtgtgtctgtccattttctgtgagcatcacaagaaatgttcaacgtgcggatctgttttt
ggtcagtctaaacttgatgatgcttcatctgtctctgataagaagagaaaagctcctagt
acctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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