KEGG   Alteromonas mediterranea DE1: amad1_12965
Entry
amad1_12965       CDS       T02340                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
amaa  Alteromonas mediterranea DE1
Brite
KEGG Orthology (KO) [BR:amaa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:amaa03016]
    amad1_12965
Enzymes [BR:amaa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     amad1_12965
Transfer RNA biogenesis [BR:amaa03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    amad1_12965
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C
Other DBs
NCBI-ProteinID: AFV86093
Position
complement(2912101..2913072)
AA seq 323 aa
MQPFVALLENTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSLGYAKLV
ELLCEISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGKVHWIYEE
VALLVEKKRAQMPEDFAYLSIKNSWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFKEG
HLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEARARYAQTPEKLRLPIVQRL
IDIAKYKKYLAELKTISEQIAKDNGVTTDVIASKKQLNQLLKWYWFPVDETRVQGLKPDL
LSTWRAPLFRPHVARLLGDEPTQ
NT seq 972 nt   +upstreamnt  +downstreamnt
atgcagccatttgttgcgttgttggaaaataccgaagtcgttaaagtattgcattcgtgt
tctgaagatcttgaggcatttcttaccgcctttgatacggtgccaacgcctgtgttcgat
acgcaaattgccggtagtatcttggatatgggcccctctctgggctatgccaagttagtg
gagctgctttgcgagatcagcttagacaaaggcgagtcgcgaacggattggctagcacgg
ccgctccgggaagctcaactgagttatgcggcgaacgacgttctttaccttttaccctgt
tatcagcagctggcgtctaacgttcaggcgctaggaaaagtgcactggatatatgaagaa
gtggcgcttttggttgagaaaaagcgtgcgcaaatgccagaagattttgcttacttaagc
attaagaatagctggcgtttaaacagtgaacagctcaccgtattgcaagcgctggcggca
tggcgattaaacacggcgagaaagaaagacctagcgctgaactttgtattcaaagaagga
catttatttgaggctgcgcagcgactgatagacgacaagtctggcttatcacggataaat
ggcgtaaatcatcagtcggttaggcgttatggcgacactatcgtaacgctgattgaagag
gcaagagcaagatatgcgcagacgccggaaaaacttagactgccaatcgtacagcggctt
atcgatatagcgaaatataaaaagtaccttgctgaacttaaaaccataagcgaacaaatt
gccaaagataacggcgtaaccacagatgttattgcgtctaaaaagcaacttaatcagctg
ttgaagtggtattggttccctgtagatgagacgcgggtacagggcttgaaacccgattta
ctctccacgtggagagcgcctttgtttcgcccacatgtagcacgtttacttggcgacgaa
ccgacacaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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