KEGG   Alteromonas macleodii ATCC 27126: MASE_07865
Entry
MASE_07865        CDS       T02246                                 
Name
(GenBank) RNase E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
amac  Alteromonas macleodii ATCC 27126
Pathway
amac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MASE_07865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amac03019]
    MASE_07865
   03009 Ribosome biogenesis [BR:amac03009]
    MASE_07865
Enzymes [BR:amac01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     MASE_07865
Messenger RNA biogenesis [BR:amac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MASE_07865
Ribosome biogenesis [BR:amac03009]
 Prokaryotic type
  rRNA processing factors
   MASE_07865
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AFS37104
Position
complement(1844121..1847519)
AA seq 1132 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPEGMGLIVRTAGVGKSYEEL
EWDLKVLLTHWEAISSVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVLRRRPDDVISEASYDVELMPAVEAETETTTSAPIKREEPALKGLVAPTAAPVVAPK
EETAKKADDVPSLFARFGKWISDLFGSESEEETNKDKKPQSGNKNRNNRSRNNDDRRRKP
RNKNNRRGNQSQNRDQGKDQNRDGEQQDNRKPRGEQQRDQRQDQDDKRNNKGRKPRKAQQ
PRDEQQKPKHEKQDGEQQENQAQKKREVAERRKRRDKRRSVRVKKDDNAVNTAEQSEAQA
TPVAKEATMQHKAKADTKPKAPKAESPVENTAEQKKDEQKPAVKAAQKPADKPAEAKPVS
DAVKGEGDSSAITSDAVDGTDANTDANSEEHGQKREGRGRSRRSPRHVRAAGQRRKKESQ
QFDDSDTQAKQPGELSPQQPEVEVEATAKTDAPVVEETQAKEPGQLAPAEEQPVAKQEKA
KLDVEAVQDELQFDAEPLAGKEPSAGNKPSADAEPSANDKPSEAVDSTDEVTSADDNATT
EAKPAKEAQTSVQESNVEETAPAAQTEPAVEAKTTQADTAPEAKDEATASPEQVEINLAD
APVVAEPEAQVQEAKADTPAAKEKAETTAAPSSSLAASGKGKRGASHPMALPAAVNDAFV
DVALTAKADDTRPALAVSGKTAAMSHVTSRASAVTTLPQSVDDVAEVAAVAE
NT seq 3399 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaattaatgcaactcagcaagaagagttgcgcgttgctcttgtcgat
gggcaacggttgtatgatttagatatagaaagtccaggacacgagcagaaaaaagcgaac
atctacaaaggtaaaattacccgcgttgaacccagcttagaagctgcttttgttgactac
ggtgcagagcgccatggcttcctacccctcaaagaaattgcccgcacttacttccctaaa
ggttacaaattcgaaggccgccctaacatcaaagatgtgattaaagaaggccaagaagta
attgttcaaattgataaagaagagcgcggccaaaaaggcgctgcattaactacattctta
tcgcttgcaggcagttacctagtacttatgccaaacaaccctcgcgctggcggtatttca
cgccgaatagagggcgacgagcgtacagagcttaaagagtcactaagcaaattggacctt
cctgaaggtatgggtttgattgtccgcactgcgggcgttggcaaatcttacgaagagcta
gaatgggatttaaaagtcttgcttacccattgggaagctatctctagcgttgctgaagaa
cgtgaagcccctttcttgattcaccaggaaagtaacgtaattgttcgtgctatccgcgac
tacctacgtcgcgatattggcgaaatccttatcgataaaaccagtatttatgagcaagct
ttacagcacattcaattagtgcgccctgactttgcaaatcgcgtaaagctctatcgcggt
gaagtgccgttatttagtcactaccaaatcgaaagccaaattgagtctgcattccaacgc
gaagtgcgtttgccttctggcggctcaattgttatcgacccaacagaagcactaacctct
atagatattaactctgcccgtgcaacaaaaggtggtgatattgaagagacagcgcttaac
acaaacctagaagcggcagacgagattgcccgtcaactgcgtcttcgtgacctaggtgga
ttggttgtaattgacttcattgatatgacaccagtacgtcaccaacgtgaagttgaaaac
cgcatgaaagacgcggtgagaagcgacagagcacgagtacaattgggtcgtatttctcgc
tttggccttttggaaatgtctcgccagcgtttacgcccttctttaggcgaatcagcgcat
cacgtttgtcctcgctgttctggtcacggtaccattcgtggcactgagtctttggcactg
tctattcttcgtattttggaagaagagagtattaaagaaaacacagggcaaattgaagca
cagttgcctgttccagttgcgacctatctacttaacgaaaagcgtaagtcaattcagctt
ctcgaaaagcgtcacggcgtagatttactgcttattcctaatgcaaacctagatacaccg
cactaccaggtattacgcagacgcccagatgacgttatatctgaagcgagttacgacgta
gagttaatgcctgcggtagaagctgagacggaaacaacgacttctgctccgattaagcgc
gaagagccagcactgaaaggccttgttgcaccaacggctgcacctgtagttgcgccaaaa
gaagaaacagcaaagaaagccgacgatgtgccttcactatttgcccgatttggcaaatgg
attagtgatttattcggtagcgaaagcgaagaagaaaccaataaagacaagaagccacag
tctggtaataaaaatagaaacaaccgcagccgcaataatgacgaccgtcgccgcaagccg
cgcaacaagaacaatcgtcgtggcaaccagtctcaaaacagagaccaaggtaaagaccag
aaccgcgatggtgagcagcaggataatcgcaaaccgcgcggcgagcagcagcgagaccaa
cgtcaagatcaagatgataagcgcaataacaaaggtcgtaagcctcgtaaggcacaacaa
cctcgcgatgagcaacaaaagcctaagcacgaaaagcaagatggcgagcagcaagaaaac
caagcgcagaagaagcgtgaagttgctgaacgtagaaaacgtcgtgataaacgccgcagc
gttcgtgtgaagaaagatgacaacgcggtgaatactgctgaacaaagcgaagcgcaggcc
acaccagtagccaaagaagcgacaatgcagcacaaagctaaagctgacaccaagcctaaa
gcgccgaaagcagagtcaccggtcgaaaacactgctgaacagaagaaggatgagcaaaag
ccagcagtcaaagccgcgcaaaagccagcggataaacctgctgaagcgaagccagtatcg
gatgctgttaagggtgaaggtgactcatcagcgataactagtgatgccgttgatggcact
gatgcgaataccgacgctaacagtgaagagcatggtcaaaaacgtgaaggccgtggccgt
tcacgccgctctccacgtcacgttcgtgcggctggtcaacgtcgtaagaaagagtcgcag
caatttgacgattcagacacgcaagctaaacagcctggtgagttgtcaccgcagcagcca
gaagtagaagttgaagcgacagctaagacagatgcacctgttgtcgaagaaacacaagca
aaagagcctgggcaactagcgccagctgaagagcaacctgttgctaagcaagagaaagca
aaacttgacgttgaagccgttcaggacgaacttcagtttgatgcagagcctttagcgggt
aaagagccttcagcgggaaataagccttcagcggatgcagagccgtcagcgaacgataaa
ccttcggaagctgtagactcaactgatgaagtaacgtcagcagacgataacgcgacaact
gaagctaaaccggctaaagaagctcaaacttcagtgcaagaaagcaacgttgaagaaacg
gctccggcagcacaaacggaaccggcagttgaagctaaaacaacgcaagctgatacggcg
ccagaagctaaagacgaagcaacagcatcgccagagcaagttgaaataaacttggctgac
gcacctgtagttgcagaaccagaagcacaggtacaagaagcgaaagcagatacgccagcg
gctaaagaaaaagctgaaacaacagcagcgccttcttcgagcctagcagcgagtggcaaa
ggaaagcgtggtgcatcgcaccctatggcattgcctgcagcagtaaacgacgcatttgtt
gatgtagcgcttaccgctaaagctgacgacacacgacctgcactcgcagtatcgggtaaa
actgcagcgatgtcgcacgtaacgtcacgtgcatcagcagtaacaacgcttcctcagtcg
gtagatgacgttgccgaagtagcagcagtggctgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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