KEGG   Alteromonas mediterranea U7: I876_02745
Entry
I876_02745        CDS       T02721                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
amae  Alteromonas mediterranea U7
Pathway
amae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I876_02745 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amae03021]
    I876_02745 (rho)
   03019 Messenger RNA biogenesis [BR:amae03019]
    I876_02745 (rho)
Transcription machinery [BR:amae03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     I876_02745 (rho)
Messenger RNA biogenesis [BR:amae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     I876_02745 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: AGP88436
Position
656295..657560
AA seq 421 aa
MNLTELKNKPISELVNLAEEMGLENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHAADRLRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPDCELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTAQDELQKMWILRKIVHEMSEIDAMDFLISKLSMTKTNNEFFDAMRRQK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaactgaattaaagaacaaaccaattagcgagttggttaacctggccgaggaa
atgggcctggaaaacatggcacgcgccagaaaacaagacatcattttctcgatccttaag
acgcacgcaaaaagcggtgaagatatctttggggatggggtattagaaattttacaggac
ggtttcggctttttacgctcagctgattcatcgtatctagcaggtcctgacgatatttac
gtatcgccaagccaaatccgacgctttaacctgcgcaccggtgatacgattgctggaaag
attcgtccaccaaaagacagcgaacgttattttgcgcttctaaaaatccgcgaagttaac
ttcgacaagcctgaaaactcacgtaacaaaatcctttttgaaaaccttacaccgctacac
gcagcagatcgcttgcgtatggagcgtggtaacggttcgaccgaagacattacagcacgt
gtactagatttggcgtcacctatcggtaaaggccaacgtggtcttatcgtagcgccacct
aaagccggtaaaacactgcttcttcaaaatattgctcagtcaattgctgctaaccacccc
gattgtgagttaatggtattgcttatcgacgagcgcccggaagaagtaacggagatgcac
cgccttgttcaaggtgaagtggttgcatcaaccttcgatgagccagctagccgtcacgta
caagtggcagaaatggttatcgaaaaagccaaacgtcttgttgaacacaaaaaagacgtg
gttattttgctcgactcaatcacccgtcttgcgcgcgcatacaacacggttattccttca
tcgggtaaagtacttactggtggtgttgacgctaacgcgcttcataaaccaaagcgcttc
ttcggtgctgcccgtaacgtagaagagggcggaagtttaacgattatcgccactgcgctt
atcgataccggctctaaaatggatgaagttatctacgaagagtttaaaggtacaggtaac
atggaactacaccttaaccgtaagattgcggaaaaacgtgtattcccagctatcgacttt
aaccgctcaggtacccgtcgagaagagttactcaccgcgcaagatgaactacaaaaaatg
tggatccttcgcaagattgttcacgaaatgtctgagattgacgcgatggacttccttatt
agtaagttgtcaatgaccaagacgaacaacgagttcttcgacgcaatgcgccgacaaaag
agctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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