KEGG   Alteromonas mediterranea U7: I876_04010
Entry
I876_04010        CDS       T02721                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
amae  Alteromonas mediterranea U7
Pathway
amae02020  Two-component system
amae02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:amae00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    I876_04010
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    I876_04010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amae03021]
    I876_04010
Transcription machinery [BR:amae03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     I876_04010
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: AGP88687
Position
complement(938258..939739)
AA seq 493 aa
MKPSLQLKFSQQLTMTPQLQQAIKLLQLSTLDLQQEIQEALDSNPLLEVEEGNDEPQVEK
NNIDSDDSVTEASATASSDTLEAGDALEKNDLPDELPIDSTWDEYYSASSAPAPGPSNDD
EQIFQGETTEDIQEHLSWQMRLTHFSDTDRAIATAIIDSIDESGYLTVTLEDILDAVNSE
DMEEPIEMDEIECVLKRIQMFDPIGSGSRSPQECLMVQLRQFSEDTPWLNEAKQLIEEYS
DLLSSKDYRTLMRKSRLKEDQLREAMRLLQTLNPRPGSALVTKEPEYVIPDVSVAKKNGR
WVVELNPDSLPKLSVNQQYAAMSRRAKNSSDSQFIRSHMQEAKWFIKSLESRNETLMKVA
NCIVQQQMGFFEHGPEMMKPMVLNDVAEMVDMHESTISRVTTQKYMHTPRGIFELKYFFS
SHVATESGGECSSTAIRALIKKLVAAEKPSKPLSDSKIASLLAEQGIKVARRTIAKYRES
LSIPPSNQRKSLI
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgaaaccatctttacagctaaaatttagccaacaacttaccatgacaccccagcttcag
caggcgataaaactgctgcagctatctacgcttgatcttcagcaggagattcaagaagcc
ctcgattcaaaccctttattggaagttgaagaaggtaacgacgagccgcaagtagaaaaa
aataatatcgatagcgacgatagcgtgacagaagcgtctgcgacagcgtctagcgataca
ttggaagcgggtgacgcgttagaaaaaaacgaccttcccgatgaattgcctatcgacagc
acatgggatgaatactattcagcgtcatcggccccagcgccaggtccttcaaatgacgat
gaacaaatatttcaaggcgaaaccaccgaggatattcaggaacatttgtcgtggcagatg
cgattgacccatttctcagatactgaccgcgccattgctacggcaattatcgactctatt
gacgagtctggctatttaaccgtgacccttgaagacattcttgacgcggtaaactctgag
gatatggaagagcctatagaaatggacgaaatagaatgcgtacttaagcgtattcagatg
ttcgaccccattggttcgggctcccgctcgccgcaggaatgtctaatggtgcaactgcgc
cagttctcagaagacacaccatggcttaacgaagccaaacagcttatagaagaatattca
gacctattaagcagtaaagattatcgcacgttaatgcgtaagagccgcttgaaggaagat
cagctgcgcgaggcaatgcgtttattacaaaccttgaatcctcgcccaggtagtgcttta
gttactaaagagcctgagtacgttattcctgatgtctcggtcgccaaaaagaatggccgt
tgggtggttgagcttaaccccgacagcctgcctaagttgagcgtaaatcaacaatacgct
gcaatgagtcgtcgtgccaaaaatagtagcgactcacaattcatccgctcacacatgcaa
gaggctaagtggttcattaagagccttgaatctcgcaacgaaaccttaatgaaggtggca
aactgtattgtgcaacagcaaatgggcttttttgaacatggcccggaaatgatgaaacct
atggtgcttaacgatgtagcagaaatggtagatatgcacgaatcaacgatttcacgcgtc
acaacgcaaaagtatatgcatacaccacgtggtatatttgaattgaaatacttcttctct
agccacgtagcaacagagtctggtggtgagtgctcatctaccgcgattcgtgcattgatc
aaaaagctagtggcggctgaaaagccgagcaagccactaagcgatagcaagattgcttca
ttgttggccgaacaaggcattaaagttgcccggcgaacaatagcaaaataccgggaatca
ttgtcgatcccgccgtcgaaccaacgcaagagcctaatttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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