KEGG   Aquitalea magnusonii: DLM_0588
Entry
DLM_0588          CDS       T05698                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
amah  Aquitalea magnusonii
Pathway
amah03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amah00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DLM_0588
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amah03019]
    DLM_0588
   03016 Transfer RNA biogenesis [BR:amah03016]
    DLM_0588
Enzymes [BR:amah01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     DLM_0588
Messenger RNA biogenesis [BR:amah03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DLM_0588
Transfer RNA biogenesis [BR:amah03016]
 Prokaryotic type
  tRNA degradation factors
   DLM_0588
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3 T6_Ig_like
Other DBs
NCBI-ProteinID: BBF84246
UniProt: A0A3G9GFD6
Position
600051..602666
AA seq 871 aa
MAQSAKKQKNIPLRMQDPFLEREKLKYSNPLPSREFVLQLLENNGVPMFPEELAAMLSIK
NTELGFFERRLLAMEREGQLIINRKGAICAAQKLDLIKCKVSGHRDGFGFALPDEGEGGG
VDIFLPEREMKKVMHGDRVLVRPSGVDRRGRQEGKIVEVLDHAVSKLVGRIHQERGVWIV
TPEDRRIRHEVLIEPGSQQDAKHGQVVMVEILQYPDAYRQPVAKVVEVLGNYADPGMEIE
IALRKHALPHEFPAEVLAQAKSTPKKVRKKDLSKDRVDLRHLPLVTIDGETARDFDDAVY
AEKQGKGFRLIVAIADVSHYVQPGDALDQEAVNRGTSVYFPRRVIPMLPEALSNGICSLN
PDVERLCMVCDMQINGKGEVKRYQFYPAVMLSKARLTYTQVWDWIQHGTDNPLLPNIQTL
YSLFKVLLAARAKRGAIEFDSIETQMIFNEQGKIDKIVPVVRNDAHRLIEECMLAANVCA
ADFLLKSKQKCLYRVHEGPTPEKLENLRNYLQLVGLTLAGNDKPTAKDYAKLAEQIHGRP
DAPVLQTMLLRSMQQAVYTPDNNGHFGLAYDAYTHFTSPIRRYPDLLVHRSIKAVLQGSK
YKPGKWAQLGMHCSMTERRADDASRDVESWLKTYYMQDKVGEVFEGKISAVTSFGVFVLL
DNVYVEGLVHISELGKDYFHFRKDIQAIVGEKSGMSYRLGDTLTVKVVSANLENAQVDFA
LVRDTTQPALAAPAGKREKPQHASHTATSSRKQNNHGGRSRNQHGKHADSRQDNVAAVPQ
AASAASGRARNQRKPAAVPTPVDPRPPVKGEPAKSTAARRKPAGSSVAAQSAGDAVVPAP
RSRRKPAASSEAAVPSAPRGRSRNTKKPNSQ
NT seq 2616 nt   +upstreamnt  +downstreamnt
atggcccaatctgcaaaaaaacaaaaaaatatccccctgcgcatgcaggatcccttcttg
gaacgagaaaaactcaaatattccaatcccttacccagccgggagttcgttctgcaactt
ctggaaaataacggtgtgccaatgttcccggaagaactggccgccatgttgtctatcaag
aataccgaattgggcttctttgagcgccgcctgctggccatggaacgtgaaggtcaactg
atcatcaatcgcaaaggtgcaatttgtgccgctcaaaagctggacctgatcaagtgcaag
gtttccggtcaccgtgacggttttggctttgctctgccggatgaaggtgaaggcggtggg
gtggatatcttcctgcccgagcgtgaaatgaaaaaagtcatgcatggcgaccgtgtgctg
gtacgtccttcgggcgttgatcgtcgtggacggcaggaaggcaagattgtcgaggtgctg
gaccatgcggtcagcaaactggtaggacgcattcatcaggagcgtggcgtctggatcgtc
acgccggaagatcgtcgtatccggcacgaggttctcatcgagcctggcagtcaacaggat
gccaagcatggccaggtcgtcatggtggaaatcctgcagtatccggatgcctaccgacag
ccggtagccaaggtcgtggaagtgctgggcaattatgctgatccgggcatggaaattgaa
attgcgctgcgcaaacatgccttgccgcatgagtttccggcagaggtattagcccaggcc
aagtccacgcccaagaaggtacgcaaaaaagacttgtccaaggatcgtgtcgacttgcgt
catctgccgctggtgaccattgatggcgaaactgcacgcgacttcgatgatgctgtctat
gcggagaagcaaggcaagggtttccggctgatcgtggccattgccgatgtcagtcattat
gtccagccgggcgatgccctggatcaagaggcagtgaatcgcggaacgtccgtctatttc
ccgcgccgtgttatcccgatgctgcccgaagcactgtcaaacggcatttgttccttgaat
cccgatgttgagcggctgtgcatggtttgtgacatgcaaatcaatggcaagggagaagtc
aaacgctatcagttctaccctgcagtcatgctttcaaaagcacggctgacctatacccaa
gtatgggactggatccagcatgggactgataacccgctgctgccgaatatccagacactc
tacagcttgttcaaggtcttgctggcagcccgtgccaagcggggggcaatcgagtttgac
tcgattgagacgcagatgatcttcaacgagcagggcaagatagacaagatcgttccggtg
gtccgcaacgatgcccatcggctgattgaagagtgcatgctggcggccaacgtctgcgcg
gcggacttcctgctcaagagtaagcagaaatgtctgtatcgcgtacatgaaggccctacg
ccagaaaaactggaaaacctgcgcaactacttgcagttggttggactgacactggccggt
aacgacaagccgacggccaaggattatgccaagctcgccgagcagattcatggtcgcccg
gatgcgccggtactgcagaccatgctgctcagatccatgcagcaggccgtctatacgccg
gacaataatggccattttggtctggcttatgatgcctacacgcatttcacctcaccgatc
cgccgttacccggatttgctggttcaccgttccatcaaggcagtattgcagggcagtaaa
tacaaacccggcaagtgggctcagctgggtatgcattgctccatgacggagcggcgggcg
gatgatgccagtcgtgacgtcgagtcctggctcaagacttactatatgcaggacaaggta
ggcgaggtattcgaaggcaagatcagtgcggtcaccagctttggcgtgtttgtgttgctg
gataatgtttatgtagaaggtctggtacatatctccgaactgggcaaggactacttccat
ttccgcaaggacattcaggcaatcgttggcgaaaagagcgggatgtcttatcgcctcggc
gatacgctgacggtaaaggtggtgagtgccaatctggaaaatgcccaggttgattttgca
ttggtgcgcgataccacgcagcctgcattggctgcgcctgcgggtaagcgtgagaagcca
cagcacgcaagccatactgctacatcctcccgcaagcagaacaaccatggtgggcgtagt
cggaatcagcatggcaaacatgctgacagccgacaagataatgtcgctgctgttccgcaa
gcggcatcggcagcatccggcagggcaaggaatcagcgtaaaccggcagcggtgccaacg
ccggtggatcctagacctcctgtgaaaggtgagccagcgaagtcgacagccgcacgacgc
aagcctgcgggaagttccgtcgctgcgcagtctgcgggggatgccgttgtacctgctccg
cgttcgcgccgtaagccggctgcaagttctgaggcagcggtaccatctgcaccgcgcggc
cgtagtcgaaataccaagaagccgaacagtcagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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