KEGG   Aquitalea magnusonii: DLM_4385
Entry
DLM_4385          CDS       T05698                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
amah  Aquitalea magnusonii
Pathway
amah03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amah00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DLM_4385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amah03021]
    DLM_4385
   03400 DNA repair and recombination proteins [BR:amah03400]
    DLM_4385
Enzymes [BR:amah01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DLM_4385
Transcription machinery [BR:amah03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DLM_4385
DNA repair and recombination proteins [BR:amah03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DLM_4385
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Biotin_lipoyl_2 Peptidase_M23
Other DBs
NCBI-ProteinID: BBF87945
UniProt: A0A3G9GKB0
Position
4674560..4678750
AA seq 1396 aa
MKALLDLFKQVTQEEEFDAIKIGIASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQYRQLLTEEDFLDKEDQYGEEFVAMM
GAEAVRELLKRLNLDTEIETLRRELEATNSDTKIKKIAKRLKVLEAFQRSGMKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFHKLEVMGLASTIKAAKKLVEQEVPEVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLATNNVLSPANGDPIIVPSQDIVLGLYYMTRDKVNGKGEGMVFADTKEVHRAYETR
QVELATRITVRLKEWEKDEQGEFQPVIKRYNTTVGRAILSDILPKGLPFEHINKALKKKE
ISKLINVSFRRCGIRDTVIFADQLMYTGFAYSTRGGISICVDDMQIPGKKVELLGEAQKE
VKEIEEQYRQGLVTQGERYNKVVDIWGRTGDKIAKAMMDELSKQKVLDRDGKEVDQESFN
SIYMMADSGARGSAAQIKQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGFTMKAVLQGGDVIEALRDRIL
GRVAAVDVVDPSTGETVLEAGTLLDEQLVDVIDSLGIDEVKVRTAITCDTRYGLCAKCYG
RDLARGKRVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAASQVEGKSNGTVRF
SSQMRYVANTKGELIVITRSGEVVIHDDMGRERERHKVPYGATLMVTDGLVIKAGAVLAT
WDPHTRPIITEYAGRVKFENVEEGNTVAKQTDEVTGLSTLVVIDPKRRAGSQSKMLRPLV
KLLDENGLEVKLAGSDASVSITFQVGAIITVRDGQEVGKGEVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLIITDLEGNGYENLIPKDKHVLVH
DGQVVNRGELIVDGPVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKINDKHIEVIIRQ
MLRRVIISDSGDTEFIQGEQVERADVLEMNDKMLAEGKEPAQFENILLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHRTRRRQGLGLDTS
GSQLLEEQVDEVENNS
NT seq 4191 nt   +upstreamnt  +downstreamnt
atgaaagctctgctcgacctctttaagcaagtaacgcaagaagaagagtttgatgcgatt
aaaatcggcatcgcttcgcccgacaagatccgttcctggtcttacggtgaagtcaaaaag
ccggaaaccatcaactatcgtaccttcaagccggaacgcgacggcctgttctgcgcccgt
atcttcgggccggtaaaagactacgaatgcctgtgcggcaaatacaagcgcctgaagcat
cgcggcgtcatctgcgaaaagtgtggcgttgaagtcaccctgtccaaggtgcgtcgcgaa
cgcatgggccatatcgaactggccagcccgaccgcgcacatctggttcctgaagagcctg
ccgtcccgtctgggcatggtgcttgacatgaccctgcgcgacatcgaacgcgtactgtac
ttcgaagcatttgtcgtgaccgatccgggcatgactccgctgcaataccgccagctgctg
accgaagaagacttcctggacaaggaagaccagtacggcgaagaattcgtcgccatgatg
ggtgccgaagccgtacgcgaactcttgaagcgtctgaacctggataccgagatcgagacc
ctgcgtcgcgaactggaagccaccaattccgacaccaagatcaagaagatcgccaagcgt
ctgaaagtactggaagccttccagcgctccggcatgaagcctgaatggatgattctggaa
gtgctgccggtactgccgccggaactgcgtccgctggtaccgctggatggtggccgtttc
gccacttccgacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgcctgctggaactgcgcgcaccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcagttgactcgctgctggacaacggtcgtcgtggcaaggccatgaccggcgccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggtaagggcggtcgcttccgtcag
aacttgctgggtaagcgtgtcgactactccggccgttcggtgattaccgtaggcccgacc
ctgcgtctgcatcagtgcggcctgccgaaaaagatggcgctggaactgttcaagcccttc
atcttccacaagctggaagtcatgggcctggcctccaccatcaaggcagccaagaagctg
gtagagcaggaagtgccggaagtatgggacatcctggaagacgtgatccgcgaacatccg
gtcctcttgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccggta
ctgatcgaaggcaaggccatccagctgcatccgctggtctgcgcggcattcaacgccgac
tttgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcgcagatggaagcc
cgcaccctgatgctggccaccaacaacgtgctgtccccggccaacggcgacccgatcatc
gtaccgtcccaggatatcgtgctgggtctgtactacatgacccgcgacaaggtaaacggc
aagggtgaaggcatggtatttgccgacaccaaggaagtgcatcgcgcctacgaaacccgt
caggtcgagctggctacccgtattaccgtccgcctgaaggaatgggaaaaggacgagcag
ggcgaattccagccggtgattaagcgctacaacaccacggttggtcgtgccatcctgtcg
gatatcttgccgaagggcctgccgttcgagcacatcaacaaggcgctgaagaagaaggaa
atctccaagctgatcaacgtatcgttccgccgttgcggcatccgcgataccgtgatcttc
gccgaccagttgatgtacaccggttttgcctactccacccgtggcggtatctccatttgc
gtggacgacatgcaaatcccgggcaagaaggtcgagctgctgggcgaagcccagaaggaa
gtcaaggaaatcgaagaacagtaccgtcaaggtctggttacccagggcgaacgctacaac
aaggtagtggacatctggggccgtaccggcgacaagatcgccaaggccatgatggacgag
ctgtccaagcagaaggtgctggaccgcgacggcaaggaagtcgatcaggaatccttcaac
tccatttacatgatggccgactctggtgcgcggggttccgcagcccagatcaagcagctg
gccggtatgcggggtctgatggccaagccggacggctcgattatcgaaacgccgattacc
gccaacttccgtgaaggcctgacggttctgcagtacttcatctccactcacggtgcgcgt
aagggtctggcggataccgccttgaagactgccaactccggttacctgacgcgtcgtctg
gttgacgtgacgcaggatctggtggtgatcgaagacgactgcggcaccagcaacggcttc
accatgaaggccgtgctgcaaggtggtgacgtgatcgaagccctgcgtgaccgtattctg
ggtcgcgtggctgcagttgacgtggtggacccgtccactggcgaaaccgtgttggaagcc
ggcaccttgctggacgagcaactggttgacgtcatcgacagcctgggtatcgacgaagtc
aaagtccgcacggccattacttgcgacacccgttatggtctgtgcgccaagtgctacggt
cgcgacctggcacgcggcaagcgcgtgaacgccggtgaagccgtcggtgtgattgccgcc
cagtcgattggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcc
gcgtcgcgaaatgccgcagccagccaggttgaaggtaagtcgaacggtaccgtacgcttc
tccagccagatgcgttatgtcgccaacaccaagggcgagctgattgtcatcacccgttcc
ggtgaagtggtgatccatgacgatatgggccgtgagcgcgaacgtcacaaagtaccgtac
ggtgccacgctgatggtaaccgacggtctggtgatcaaggccggtgcagtcctggcaacc
tgggacccgcacacccgtccgatcatcaccgagtacgctggccgcgtgaagttcgaaaac
gtggaagagggcaacaccgttgccaagcagaccgacgaagtgaccggtctgtccaccctg
gtggttatcgatccgaagcgtcgtgccggttcgcagtccaagatgctgcgtccgctggtg
aagctgctggacgagaatggtctggaagtgaagctggcaggttcggatgcttcggtatcc
atcaccttccaggtgggcgccatcattaccgtgcgtgacggtcaggaagtgggcaagggt
gaagtgctggcccgtatcccgcaagaatcgtccaagacccgtgacattaccggtggtctg
ccgcgtgtggccgagctgttcgaagcccgttcgccgaaggatgccggcatgctggccgag
gtgaccggtaccgtttccttcggtaaggacaccaagggcaaacagcgtctgatcatcacc
gatctggaaggcaatggttacgaaaacctgatcccgaaagacaagcacgtactggtacac
gatggtcaggtcgtcaaccgtggtgaactgattgtcgatggtccggttgatccgcacgac
atcctgcgtctgcaaggtatcgaagcgctggcacgttacatcgtccaggaagttcaggaa
gtgtaccgtctgcaaggtgtgaagattaacgacaagcacatcgaagtgatcattcgccag
atgctgcgtcgtgtcatcatctccgacagcggcgacaccgagttcatccagggtgaacag
gtagaacgtgccgacgtgctggaaatgaatgacaagatgctggccgaaggcaaggaacct
gcccagttcgagaacatcctgctgggtattaccaaggcttccctgtccaccgactccttc
atctcggcggcttccttccaggaaaccacccgcgtgctgaccgaagcagcgatcatgggc
aagaaggacgatctgcgcggtctgaaggaaaacgtgatcgtgggtcgactgatcccggct
ggtactggtttggcttaccaccgcacccgtcgtcgtcagggcttgggtctggacacttcc
ggttcccaactgttggaagagcaagtggatgaagtagaaaacaacagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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