KEGG   Alteromonas mediterranea U4: I607_07970
Entry
I607_07970        CDS       T02720                                 
Name
(GenBank) RNase E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
amal  Alteromonas mediterranea U4
Pathway
amal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I607_07970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amal03019]
    I607_07970
   03009 Ribosome biogenesis [BR:amal03009]
    I607_07970
Enzymes [BR:amal01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     I607_07970
Messenger RNA biogenesis [BR:amal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     I607_07970
Ribosome biogenesis [BR:amal03009]
 Prokaryotic type
  rRNA processing factors
   I607_07970
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AGP85389
Position
complement(1783008..1786430)
AA seq 1140 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPDGMGLIVRTAGVGKSYEEL
EWDLKVLLKHWEAISEVAEGREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVLRRRPDDVVSEASYDVELMPAVEAETETTTTTPVKREEPALKGLVAPTAAPVVAPK
EEPAKKAEDVPSLFARIGKWISDLFGSEGEEESNKDKKHQSTDTNKNRNNRSRNNDDRRR
KPRNKNQRRNNSSQNRDQNKDQGRDEQQDNRKARGDQRQDQRQDQDDKRNNKGRKPRKAQ
QPRDEQQKPKHEKQEGEQQENQAQKKREVAERRKRRDKRRSVRVKKDDNTPSTVEQTEAQ
AVPAQNGNEAVKASQQDAKAQSKPKADAKPQKAVKADEVEAQSGNTAAQKQETKKPAKKP
VDKASEEKSAREADKVEGSQTDSADTTEANSEENGQKREGRGRSRRSPRHVRAAGQRRKK
ESQQVDEAETQAKQPGELEPQEPETSTVATQTEAPAVEETQAQEPGKLAPSEEQPASNQE
KQDTANLDVEAVQDELQFDVEPSAGKEPSAGKKPLAKEQPSAEEQPSAKEQASAEETPVG
GNTTSADENSVAKAAPLSQEEAVAKAQASTDSSTSSDEVASEEAAPSEVKATSDNASEQA
AEESASASPEQVEINLAETTEAAVETKANAPVAKAPAKQQVSETSSLAASGKGKRGASHP
MALPAEVNDAFVDVALTAKADNERPALAVSGKTAAMAQAGSRASAPTTLPKSVDADAVAQ
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttaatcaatgcaactcaacaagaagagttgcgcgttgccctagtcgat
gggcaacggttgtacgatttagatatagagagtccaggacacgaacaaaagaaagcaaat
atctacaagggtaaaattacccgtgttgaacccagcttagaagcagcgtttgttgactac
ggcgcagagcgtcatggattcctaccccttaaagaaatagcccgcacttacttccctaaa
ggttacaaattcgaaggccgccctaacatcaaagatgtgattaaagaaggccaagaagtt
atcatccaaattgataaagaagagcgcggccaaaaaggcgcggcactaaccacattttta
tcgcttgcgggaagttacttagtgcttatgccaaacaaccctcgtgctggcggtatttct
cgccgaattgagggtgatgagcgcactgagcttaaagagtcactaagcaaacttgacctt
ccagatggcatgggccttattgttcgtaccgctggtgtaggtaaatcttacgaagaatta
gagtgggatttaaaagttcttcttaagcactgggaagcaatttcagaggttgctgaaggt
cgtgaagcaccgtttttaattcaccaagaaagcaacgttattgttcgcgctatccgcgac
tatctacgtcgtgatattggcgagattcttatcgacaagaccagcatctacgagcaggca
ctacagcatattcagctagtccgtcctgatttcgcaagccgtgtaaagctttatcgcggt
gaagttccattatttagtcactatcaaattgaaagccaaatcgagtcagccttccaacgt
gaagttcgcctgccgtctggtggttcaattgttattgacccaacggaagcgttgacttcc
attgatatcaactctgcccgtgctactaagggtggcgatatcgaagaaacagcccttaac
actaacctagaagcggctgatgaaattgcccgtcaattacgccttcgagatctaggtggt
cttgttgttatcgacttcattgacatgacccccgttcgtcatcagcgtgaagttgaaaac
cgcatgaaagatgcggtaagaagcgacagagcgcgtgtacagttagggcgtatttcacgc
tttggtctattagaaatgtcacgccagcgcctgcgcccttctctcggtgagtctgcgcat
cacgtgtgccctcgctgttcaggccacggtactattcgcgggactgagtctttggcgctg
tctattcttcgcatactagaagaagaaagtattaaagaaaatacagggcaaattgaagcg
caattgcctgtacccgtagcaacctacttactgaacgaaaaacgtaagtctattcagcta
ctagaaaaacgtcacggtgtagatttgctgctcattccaaacgcgaacctagacacaccg
cactaccaagtattgcgtcgtcgtcctgacgatgtggtatctgaagctagctacgacgtt
gagttaatgcctgcggtagaagcagaaactgaaacgacgactacgacgccagttaagcgc
gaagaacctgcgcttaagggcctagttgcaccaacggctgcaccggttgttgcacctaaa
gaagagccagcgaagaaagctgaagacgtgccttcattatttgcgcgtattggaaagtgg
atcagcgacttgtttggctctgaaggtgaagaagagagcaacaaagacaagaaacatcaa
tctactgatacaaataagaatagaaacaatcgcagccgcaataacgacgaccgtcgtcgt
aagccgcgcaataaaaaccagcgtcgtaataactcatctcaaaacagagaccagaataaa
gaccaaggtcgtgacgagcagcaggataatcgcaaagcacgcggtgatcagcgccaagac
cagcgtcaagatcaagacgacaagcgcaacaacaaaggtcgcaagccacgtaaagcgcag
cagcctcgcgacgagcagcaaaagcctaaacacgagaagcaagaaggcgaacagcaagaa
aaccaagcgcagaagaagcgtgaagttgctgaacgcagaaagcgccgtgacaagcgtcgt
agcgttcgtgtaaagaaagatgacaatacgccaagcactgtagagcaaacagaagcgcaa
gcggtacctgcccagaacggcaacgaggctgtaaaagcatctcaacaggatgcaaaagcg
caaagtaagccgaaagctgacgcaaagcctcaaaaggcggtgaaagccgatgaggtagaa
gcacagtcaggcaatacggctgctcagaaacaagaaacgaaaaaaccagctaaaaagcct
gtagacaaagcgtctgaagaaaaatctgcacgagaagccgacaaggttgaaggtagccaa
acagatagcgctgacactacagaggcgaacagcgaagaaaacgggcaaaaacgcgaagga
cgtggtcgttcgcgccgttctcctcgtcacgtacgtgcagctggtcagcgtcgtaagaaa
gagtctcagcaagttgatgaagctgaaacacaagcgaagcaacctggcgaacttgagcct
caagagccagagacaagcacagtagctacgcaaacagaagcgccggctgttgaagaaact
caagcacaggagcccggaaagctagcgccatctgaagagcaaccagcatctaatcaagaa
aagcaagacaccgcgaaccttgacgttgaagcggttcaagacgaacttcagtttgatgta
gagccttcagcgggtaaggagccttcagcgggtaagaagcctttagcgaaagaacagcct
tcagcggaagaacagccttcagcgaaagaacaagcttcagcagaagagactcctgtagga
ggcaatacaacttcagctgatgagaactctgtcgctaaagcagcccctctttcacaagaa
gaggcggttgcaaaagcgcaggcttctaccgatagcagcacctcatctgatgaagtagcg
tctgaagaggctgccccttctgaagtgaaagcgacgtctgacaacgcgtcagaacaagcc
gcagaggaaagcgcttcagcatcgccagagcaggttgaaatcaaccttgcagaaacaacc
gaagcagcagtagaaactaaagcgaacgcaccggtagcgaaagcgcctgctaagcaacag
gtttcagaaacgtcaagcttagctgcaagcggtaagggtaagcgcggcgcatctcatccg
atggcgctacctgctgaagttaacgacgcctttgtagatgttgcgttaacggctaaagcc
gataacgaacgtccagcgctggccgtttcgggtaaaacagccgcaatggctcaggcaggc
tctcgagcatcagcgccaacaacactacctaagtcggttgacgctgacgcagtagcgcaa
tag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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