KEGG   Alteromonas mediterranea U4: I607_18300
Entry
I607_18300        CDS       T02720                                 
Name
(GenBank) chaperonin GroEL
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
amal  Alteromonas mediterranea U4
Pathway
amal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I607_18300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amal03019]
    I607_18300
   03110 Chaperones and folding catalysts [BR:amal03110]
    I607_18300
   03029 Mitochondrial biogenesis [BR:amal03029]
    I607_18300
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:amal04147]
    I607_18300
Enzymes [BR:amal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     I607_18300
Messenger RNA biogenesis [BR:amal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     I607_18300
Chaperones and folding catalysts [BR:amal03110]
 Heat shock proteins
  HSP60 / Chaperonin
   I607_18300
Mitochondrial biogenesis [BR:amal03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    I607_18300
Exosome [BR:amal04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   I607_18300
  Exosomal proteins of other body fluids (saliva and urine)
   I607_18300
  Exosomal proteins of breast cancer cells
   I607_18300
  Exosomal proteins of colorectal cancer cells
   I607_18300
  Exosomal proteins of bladder cancer cells
   I607_18300
SSDB
Motif
Pfam: Cpn60_TCP1 CFAP298
Other DBs
NCBI-ProteinID: AGP87428
Position
complement(4127500..4129140)
AA seq 546 aa
MAAKEVRFGDDARSKMLKGVNTLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDEAGDGTTTATVLAQAIVTEGLKSVAAGMNPMDLKRGI
DKAVIAAVEELKALSTDCADSKSIAQVGTISANSDAEVGDIIAQAMEKVGKEGVITVEEG
QALQNELDVVEGMQFDRGYLSPYFINNQENGTVELDNPFILLVDKKISNIRELLPTLEGV
AKAGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV
ISEEIGLELEKVQLEDLGTAKRVVINKDNTTVVDGNGDQEAIEGRCAQIKGQIEESSSDY
DKEKLQERLAKLSGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVPGGGVALV
RAAAKLSELTGDNEDQTVGVKLALRAMEAPLRQISINSGAEASVVVNEVKNGDGNYGYNA
GNDTYGDMLEMGILDPTKVTRSALQFASSIASLMITTEAMVAELPKDEAAPAMPDMGGMG
GMGGMM
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggcagctaaagaagtacgttttggtgatgacgctcgcagcaaaatgctaaaaggcgta
aacacactagctaatgcagttaaagtaacactaggtccaaaaggccgtaacgttgttcta
gacaagtctttcggtgcaccaactatcactaaagatggtgtgtctgtagcgaaagaaatc
gagcttgaagacaagttcgaaaacatgggcgcgcagatggtaaaagaagtcgcgtctaaa
gcgaacgacgaagcgggtgacggtacaactactgcaaccgttctagcgcaagctatcgta
actgaaggccttaagagcgttgcggcgggtatgaacccaatggaccttaagcgcggtatc
gacaaagcggttatcgcggctgttgaagagcttaaagccctttctactgactgtgcagac
agcaagtctatcgcacaggtaggtactatctctgcaaactctgacgcagaagttggcgac
atcattgctcaagcaatggaaaaagtgggtaaagaaggtgttatcaccgtagaagaaggt
caagcacttcaaaacgaactagacgttgttgaaggtatgcagttcgaccgcggttaccta
tcgccatacttcatcaacaaccaagaaaacggcaccgttgaactagacaacccgttcatc
ctattggttgacaagaaaatttctaacatccgcgaactactgcctacccttgaaggcgta
gcgaaagcgggtaagccgctaatgatcatcgctgaagatgttgaaggcgaagcgcttgct
acactagtagttaacaacatgcgtggtattgttaaagttgcagcggttaaagctcctggt
tttggtgaccgtcgtaaagcaatgcttcaagacatcgctattctaactggcggtactgta
atctctgaagagattggtcttgagcttgaaaaagttcaactagaagaccttggtactgct
aagcgcgtagttatcaacaaagacaacaccactgttgttgacggtaacggcgaccaagaa
gcaattgaaggccgttgtgcacaaatcaaaggtcaaattgaagagtcttcgtctgactac
gacaaagagaagcttcaagaacgtcttgctaagctttcaggcggtgttgcagtaattaaa
gttggtgcagcgactgaagttgaaatgaaagagaagaaagaccgcgtagaagatgcacta
catgcaactcgcgcagcggttgaagaaggtgtggtacctggtggtggtgttgcactagta
cgcgcagcggcgaagctttctgagctaactggcgacaacgaagaccaaacagtaggtgtt
aagcttgcgctacgtgcaatggaagcgcctctacgtcaaatctctatcaattcaggtgca
gaagcatcagtagtggttaacgaagtgaagaacggcgacggtaactacggttacaacgct
ggtaacgacacttacggcgacatgctagagatgggtattcttgacccaactaaagtaacg
cgctctgcactacagttcgcatcatcaattgcttcactaatgatcactactgaagcaatg
gtagctgaactacctaaagacgaagctgcgccagcaatgcctgatatgggcggcatgggc
ggaatgggcggcatgatgtaa

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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