KEGG   Alteromonas mediterranea U8: I634_17625
Entry
I634_17625        CDS       T02722                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
amao  Alteromonas mediterranea U8
Pathway
amao03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    I634_17625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amao03021]
    I634_17625
   03400 DNA repair and recombination proteins [BR:amao03400]
    I634_17625
Enzymes [BR:amao01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     I634_17625
Transcription machinery [BR:amao03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     I634_17625
DNA repair and recombination proteins [BR:amao03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      I634_17625
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid Peptidase_M23
Other DBs
NCBI-ProteinID: AGP95203
Position
complement(4018324..4022496)
AA seq 1390 aa
MKDLLKFLKQQNKTEEFDNIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEEYLDALEEHGDEFDAKM
GAEAVFDLLTVLDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKEIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQQSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVQMTPLIEGGDVVEPLRERVL
GRVVAEDVIKPGTDEVLVERNVLLDEALVDMLEANSVDQIQVRSVITCDNDFGVCAKCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNAKFVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW
DPHSHPIITERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKVNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGTIGFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEKVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCVITSPGDTQFL
EGEQVEVSNVKVANREIEKLGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEQIEEMSVSAADAEQALTEAL
NAGADEDTAE
NT seq 4173 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctaaagcaacaaaacaagaccgaagaattcgataatatt
cgaatcggtctgtcttcacctgacatgattcgttcatggtcattcggtgaagttaaaaag
cctgaaacaattaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgcgcgt
atcttcggtccggtaaaagactatgaatgtctttgcggcaagtacaagcgccttaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacactgactaaagtacgtcgtgag
cgtatgggtcacatcgagctagctagcccggttgcacacatctggttccttaaatcactt
ccgtctcgtatcggcttaatgcttgatatgacacttcgtgatatcgaacgcgtactttac
tttgaatcatacgtggtaacagagccaggtatgacgacccttgagcgcagccaacttctt
aacgaagaagagtacttggatgcacttgaagagcacggtgatgagtttgatgcgaagatg
ggtgctgaagcagtattcgatcttctaacagtacttgacgtagacgcagacgttgcggct
atgcgtgaagagctgccttcaatcaactctgaaacgaagcgtaagaaaattactaagcgt
cttaagttgcttgagtcattccagcagtctggcaacaagccagagtggatgattatgacg
gtacttccggtacttccaccggaccttcgtcctctagttccactagatggcggccgtttt
gcaacgtctgaccttaacgacctataccgtcgtgtaattaaccgtaacaaccgtcttaag
cgtcttctagacctagctgctccagacattatcgtacgcaacgaaaagcgtatgcttcaa
gagtctgttgatgcgcttctagataacggacgtcgtggccgtgcgatcactggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaagggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactattctggccgttctgtaattaccgttggtccaacg
ctacgtcttcaccagtgtggtcttcctaagaagatggcactagagctatttaagccgttt
atctacggtaagcttgaaggtcgtggtcttgcgacaacaattaaagctgctaagaagctt
gtagagcgcgaagcaccagaggtttgggacgtactagatgacgttatccgcgaacacccg
gtactacttaaccgtgcacctacacttcaccgtttgggtatccaagcattcgaacctaca
ctaatcgaaggtaaagcgattcagcttcacccgctagtgtgtgcggcgtataacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttgacgatcgaagcacagctagaagca
cgtgcacttatgatgtcaacgaacaacatcctgtcgccagcgaacggtgagccaatcatc
gtaccttcacaggacgttgtattaggtctttattacctgacgcgtgacaaagtaaacggc
ttaggcgaaggcatggtatttaccagcccgaatgaagcagaaaaagcataccgtacaggt
aatgcggagcttcactcacgcgttaaagtacgtattactgagtacgacatcgatgaagat
ggcaacaaaactgagaaagtaacgcttactgacactactgttggtcgtgcaattttctca
ttgatccttccaaagggtctaccgtttgaaatcatcaaccaagccatgggtaaaaagcag
atttcaagactattgaatgcttgctaccgtacgctaggcttgaaagatacagtaattgct
gctgaccaaatcatgtataccggtttccactacgcgatgatcgcgggtgcgtcagttggt
atcgacgatatggtaatccctgctgctaagaaagaaatcatcgacgcggcagaagcagaa
gttatcgaaattcaggaacagttccaaaacggtcttgttaccgcgggtgagcgttacaac
aaagttatcgatatctggtcaaatgccaacgaaaaagttgctaaggccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcagcaatcatttaac
tctgtttacatgatggccgactcgggtgctcgtggtagtgccgctcagattcgtcagcta
gcaggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattaca
gcgaacttccgtgaaggtctgaacgtactacagtacttcatctctactcacggtgcgcgt
aaaggtctagcggataccgcacttaagacagctaactcgggttacctaacacgtcgtcta
gtagacgttgcacaggacttggtaatcactaacgacgactgtggcacattcgaaggtgtt
caaatgacaccactaatcgaaggtggtgacgttgttgaaccacttcgcgagcgtgtacta
ggtcgtgtagttgctgaagatgttattaagcctggtactgatgaagtattggtagagcgt
aatgtactactagacgaagcgctagtagacatgcttgaagccaactctgttgaccaaatc
caagtacgctctgttatcacgtgtgacaacgacttcggtgtttgtgctaagtgttacggt
cgtgaccttgcacgcggtcacatggtcggtagcggtgaatcggttggtgttattgcagca
caatcaatcggtgagcctggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcaagagcatcagcggaaaacagcgtacaagttaaaacagcgggtagccttaagcta
cacaacgcgaagttcgtacgtaactctgacggcaaagtggttatcgtttctcgctcaaca
gaacttactgttatcgatgagcaaggccgcgagaaagagcgctataaagtaccttacggt
gcagtacttagcgtggatgacggtgcaactattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcatcactgaacgtgcagctaagattagcttcgcagacatt
gatgactctaacacagagatgcagcaggacgagcttactggtctaacccgtatcgttgtt
aaagaccttgctaaagttaactctaaagagcctaagctaattcttgaaagcgacgagttc
ggtcttcaagaaattcgtcttccaagcttcacaacgattgaagcgaaagaaggcaaagta
gctaacgaaggtgacgtgcttgcacgtattcctcaggaaagctcgaagactcgtgatatc
accggtggtctaccgcgcgttgcggacttatttgaagcacgtaagcctaaagagcctgca
attcttgcagaaatctcaggtactatcggcttcggtaaagagaccaaaggtaagaagcgt
cttgtaattacaccagctgaaggtgatgcatacgaagagatgattcctaagtggcgtcag
cttaacgtgttcgaaggtgagaaagtggaaaaaggcgaagttatcgccgacggtccagag
tctccacacgatatcctgcgtctacgtggtatctcagcagtagcaaactacatcgtgaac
gaagttcaggaagtataccgtctacagggtgttaagattaacgataaacacatcgaagta
gttatccgtcagatgctacgtaagtgtgttatcactagtcctggcgatacgcagttcctt
gaaggcgaacaggttgaagtatcgaacgttaaagtggcgaaccgtgaaattgaaaaactc
ggtaagattccagcgcagtacgaaacacagctgcttggtatcactaaagcgtcactgtct
actgagtcatttatctcagcagcatcgttccaagaaacaacccgtgtgctaactgaagct
gcggttcaaggtaaagaagatgacctacgcggtctgaaagaaaacgtaatcgttggtcga
ctcattccagcgggtaccggtttcgcttaccacgaacgccgcgcacaacgtcgcaaagag
caaatcgaagaaatgtcggtatctgccgctgatgcagaacaggcattaaccgaagcgctt
aatgccggtgcagacgaagatactgccgaataa

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